iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-005693

Ensembl Protein ID

scaffold_601935.1

UniProt Accession

D7LYF4; D7LYF4_ARALL

Genbank Protein ID

EFH48086.1

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

GL348718

Gene Name

ARALYDRAFT_909878

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_601935.1	scaffold_601935.1	scaffold_601935.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	2.40e-06	28.6	153	195

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf....kdgplvlpCgHvfhadCl.qkwpglknssskefrCPlC 45
           C+iC+e +    kd + v+ CgH++h++C  +++      ++ +f CP+C
   Q: 153  CPICYEYLfdslKD-TNVMKCGHTMHLECYnEMI------KRDKFCCPIC 195
           ****9999444455.66899*********84444......999******* PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MEASPNDRLH FGKMGFGCKH YKRRCQIRAP CCNEVFDCRH CHNESTSTLR NIYDRHDLVR 60
QDVKQVICSV CDTEQPVAEV CSNCGVNMGE YFCNICKFYD DDTEKQQFHC DECGICRVGG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTTTTCTCC TCCTGTTCTC ATGGAAGCTT CACCCAATGA TCGACTTCAT TTTGGCAAAA 60
TGGGTTTCGG GTAAAAAAAA ACAAATCCTC TGTTTTTTAC TCTGTTTCTT GAAATCTTTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR031109--Rinc_finger_CHY_Zinc_plant
IPR004039--Rubredoxin-type_fold
IPR027370--Znf-RING_LisH
IPR008913--Znf_CHY
IPR017921--Znf_CTCHY
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51266--ZF_CHY
PS51270--ZF_CTCHY
PS50089--ZF_RING_2

Pfam

PF05495--zf-CHY
PF13445--zf-RING_UBOX

SMART

SM00184--RING

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:1900425--P:negative regulation of defense response to bacterium
GO:1901485--P:positive regulation of transcription factor catabolic process

KEGG

aly:ARALYDRAFT_909878

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002810	Amborella trichopoda	71.64	2.00e-114	404.00
IUUC-Ath-006798	Arabidopsis thaliana	97.38	2.00e-156	543.00
IUUC-Bdi-014453	Brachypodium distachyon	65.48	2.00e-100	357.00
IUUC-Bol-015451	Brassica oleracea	92.13	1.00e-149	521.00
IUUC-Bra-017136	Brassica rapa	92.88	6.00e-151	525.00
IUUC-Cin-025667	Ciona intestinalis	46.37	9.00e-66	242.00
IUUC-Csv-025807	Ciona savignyi	44.22	4.00e-65	240.00
IUUC-Dme-031649	Drosophila melanogaster	44.08	1.00e-52	199.00
IUUC-Eeu-034769	Erinaceus europaeus	37.14	2.00e-23	102.00
IUUC-Gma-044156	Glycine max	83.15	3.00e-138	483.00
IUUC-Hvu-047085	Hordeum vulgare	65.87	7.00e-101	359.00
IUUC-Lch-050661	Latimeria chalumnae	44.44	4.00e-62	230.00
IUUC-Lpe-051107	Leersia perrieri	67.61	2.00e-101	361.00
IUUC-Mtr-057867	Medicago truncatula	80.90	9.00e-134	468.00
IUUC-Mac-065603	Musa acuminata	74.25	5.00e-120	422.00
IUUC-Oba-075296	Oryza barthii	66.80	4.00e-103	366.00
IUUC-Obr-076751	Oryza brachyantha	67.89	8.00e-101	358.00
IUUC-Ogl-077845	Oryza glaberrima	66.80	4.00e-103	366.00
IUUC-Ogu-078026	Oryza glumaepatula	62.88	2.00e-97	347.00
IUUC-Oin-079551	Oryza indica	63.53	2.00e-99	354.00
IUUC-Olo-080782	Oryza longistaminata	67.21	1.00e-100	359.00
IUUC-Ome-081602	Oryza meridionalis	66.80	2.00e-102	364.00
IUUC-Oni-082797	Oryza nivara	67.19	1.00e-103	368.00
IUUC-Opu-083572	Oryza punctata	66.80	1.00e-102	365.00
IUUC-Oru-085188	Oryza rufipogon	67.19	9.00e-105	373.00
IUUC-Osa-085573	Oryza sativa	67.19	2.00e-103	367.00
IUUC-Pop-099126	Populus trichocarpa	81.04	6.00e-134	469.00
IUUC-Ppe-101325	Prunus persica	83.15	1.00e-136	478.00
IUUC-Sit-110031	Setaria italica	64.73	3.00e-103	367.00
IUUC-Sly-111421	Solanum lycopersicum	84.27	1.00e-136	477.00
IUUC-Stu-112471	Solanum tuberosum	82.40	3.00e-134	469.00
IUUC-Sbi-114253	Sorghum bicolor	66.40	4.00e-101	360.00
IUUC-Tca-121199	Theobroma cacao	85.60	7.00e-131	458.00
IUUC-Tae-125231	Triticum aestivum	66.40	6.00e-100	356.00
IUUC-Vvi-131409	Vitis vinifera	80.52	2.00e-133	467.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence