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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-007295
Ensembl Protein ID AT1G62040.1
UniProt Accession Q8S927; O80708; ATG8C_ARATH
Genbank Protein ID BAB88389.1; AAC28521.1; AEE33916.1; BAC43369.1; AAO63861.1; AAM63084.1
Protein Name Autophagy-related protein 8c; Autophagy-related ubiquitin-like modifier ATG8c
Genbank Nucleotide ID AB073177; AC004392; CP002684; AK118776; BT005441; AY085871
Gene Name ATG8C; APG8C; At1g62040; F8K4.23
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G62040 AT1G62040.1 AT1G62040.1
AT1G62040 AT1G62040.2 AT1G62040.2
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
PINAHINT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
ULD/UBL/ATG8 1.20e-47 161.3 15 117
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UBL/ATG8
   S: 2    rkeevekirdkfpdkiPvivekakkekipeldkkkylvPsdltvgqlvkiirkrlqlraedalfllvnnslvsvsatlaeiyeeekdedgflyvayas 99
           r+ e+++ir+k+pd+iPvive+a+++++p++dkkkylvP+dltvgq+v+++rkr++l ae+a+f++v n+l++++a++++iy+e+kdedgfly++y++
   Q: 15   RQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSG 112
           8899********************************************************************************************** PP
   S: 100  eetfG 104
           e+tfG
   Q: 113  ENTFG 117
           ****9 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton.
 Ubiquitin-like modifier involved in autophagosomes formation. May mediate the delivery of the autophagosomes to the vacuole via the microtubule cytoskeleton.
Protein Sequence
(Fasta)
MANSSFKLEH PLERRQIESS RIREKYPDRI PVIVERAERS DVPNIDKKKY LVPADLTVGQ 60
FVYVVRKRIK LSAEKAIFVF VKNTLPPTAA MMSAIYDENK DEDGFLYMTY SGENTFGLV 119
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007295|ULD,ATG8|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATAAAATAAA TCAACCAAAT TAATGAGTCA AGACAAAAAA GTTCAACGAG AACCGAATGT 60
TATTCTAAAC CAAACCATAA TCCGGTACAA ATTTCCGGTT CTGCAGCAGG ACAAATGGCA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007295|ULD,ATG8|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0025--Alternative splicing
KW-0072--Autophagy
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0206--Cytoskeleton
KW-0449--Lipoprotein
KW-0472--Membrane
KW-0493--Microtubule
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0833--Ubl conjugation pathway
KW-0926--Vacuole
Interpro

IPR004241--Atg8-like
IPR029071--Ubiquitin-rel_dom
Pfam

PF02991--Atg8
Gene Ontology

GO:0000421--C:autophagosome membrane
GO:0031410--C:cytoplasmic vesicle
GO:0005874--C:microtubule
GO:0006914--P:autophagy
GO:0015031--P:protein transport
KEGG ath:AT1G62040
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000059 Aegilops tauschii 85.47 7.00e-57 211.00
IUUC-Atr-002791 Amborella trichopoda 88.89 5.00e-60 221.00
IUUC-Aly-006527 Arabidopsis lyrata 99.16 3.00e-66 242.00
IUUC-Ago-007898 Ashbya gossypii 69.30 2.00e-46 176.00
IUUC-Bdi-014320 Brachypodium distachyon 91.53 8.00e-62 227.00
IUUC-Gma-044021 Glycine max 91.60 1.00e-61 226.00
IUUC-Hvu-047588 Hordeum vulgare 88.89 1.00e-59 220.00
IUUC-Lpe-051450 Leersia perrieri 88.24 9.00e-60 220.00
IUUC-Mtr-057664 Medicago truncatula 88.24 5.00e-53 198.00
IUUC-Mac-064739 Musa acuminata 90.76 8.00e-55 204.00
IUUC-Oba-075926 Oryza barthii 91.53 7.00e-62 228.00
IUUC-Obr-076374 Oryza brachyantha 91.53 7.00e-62 228.00
IUUC-Ogl-077457 Oryza glaberrima 91.53 7.00e-62 228.00
IUUC-Ogu-078078 Oryza glumaepatula 91.53 7.00e-62 228.00
IUUC-Oin-079771 Oryza indica 91.53 7.00e-62 228.00
IUUC-Olo-080412 Oryza longistaminata 91.53 7.00e-62 228.00
IUUC-Ome-081791 Oryza meridionalis 91.53 7.00e-62 228.00
IUUC-Oni-082774 Oryza nivara 91.53 7.00e-62 228.00
IUUC-Opu-083486 Oryza punctata 91.53 3.00e-61 227.00
IUUC-Oru-084425 Oryza rufipogon 87.39 3.00e-59 219.00
IUUC-Osa-085439 Oryza sativa 91.53 7.00e-62 228.00
IUUC-Ola-086310 Oryzias latipes 59.65 3.00e-40 155.00
IUUC-Ppa-095787 Physcomitrella patens 83.90 5.00e-58 214.00
IUUC-Pop-099400 Populus trichocarpa 88.98 3.00e-53 199.00
IUUC-Ppe-101670 Prunus persica 91.45 3.00e-54 202.00
IUUC-Sit-109732 Setaria italica 90.68 3.00e-61 225.00
IUUC-Sly-111488 Solanum lycopersicum 90.60 7.00e-54 201.00
IUUC-Stu-112559 Solanum tuberosum 90.60 7.00e-54 201.00
IUUC-Sbi-114346 Sorghum bicolor 91.53 8.00e-62 227.00
IUUC-Tni-120706 Tetraodon nigroviridis 60.18 4.00e-40 155.00
IUUC-Tca-121537 Theobroma cacao 92.37 3.00e-62 229.00
IUUC-Tae-124455 Triticum aestivum 88.24 4.00e-60 222.00
IUUC-Tur-126158 Triticum urartu 84.62 6.00e-56 207.00
IUUC-Vvi-130830 Vitis vinifera 90.60 4.00e-54 202.00
Created Date 25-Jun-2017

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