iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099319

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Photoregulatory zinc-finger protein COP1

Genbank Nucleotide ID

CM000350

Gene Name

POPTRDRAFT_807645; POPTR_0014s15740g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0014s15740	POPTR_0014s15740.1	POPTR_0014s15740.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.20e-09	37.5	45	109
E3 adaptor/Cullin RING/DCX/DWD	3.90e-29	100.5	544	581
UBD/Beta-Prp	4.30e-41	142.1	368	669

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawc 69
           ++flCpI +++ +d   + +G+++   +I  +l++++  cP +++ lt ++l Pn  l++l ++  
   Q: 45   KDFLCPICMQIIKDAFLTVCGHSFCYMCITTHLRNKND-CPCCSHYLTTNQLFPNFLLQKLLKKAS 109
           79***********************************9.*******************99987755 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH   v+ ++f s+  l+s+s D t+++WD++++ +++
   Q: 544  GHRKTVSYVKFlSNSELASASTDSTLRLWDVKENLPVR 581
           8999*******977899*************99887765 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlk 91
            + ++++ f +d++++at++ +++ikv+d+++           + ++s  + + +++++++ +k  ++++   +++ vwd+ t++ v+ ++
   Q: 368  ANIVSSIEFDRDDEFFATAGVSRRIKVFDFSSVVNepadvhcpVVEMSTRS-KLSCLSWNKFTKnQIASSDYEGIVTVWDVTTRQSVMEYE 457
           567899**************************5558999888877777776.799999998776466666667****************** PP
   S: 92   ghedsvlslsfspsg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdl.ktgkllrtltggh 179
           +he++++s++fs++  + lvsGs+d  ++vw ++++  + +++ +  + ++cv+++p + n+++ Gs+D ++  +dl +  + l+ ++g h
   Q: 458  EHEKRAWSVDFSRTEpSMLVSGSDDCKVKVWCTKQEASVLNIDMK--ANICCVKYNPGSsNYIAVGSADHQIHYYDLrNVTNPLYVFSG-H 545
           *************888***************88888888655554..459********9******************445789*****9.* PP
   S: 180  tdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW..dlrsgdllktlqlhn.... 264
            + v  ++f sn+ el+s+s+d+t++lwd++++  vrt++ght+  + v +s  +e++++gs+ + ++++   + +  +++ +  ++    
   Q: 546  RKTVSYVKFLSNS-ELASASTDSTLRLWDVKENLPVRTFRGHTNEKNFVGLSVSSEYIACGSETNEVFVYhkEISKPVTWHRFGSPEmdda 635
           ***********97.********************************************************66666666677777777**** PP
   S: 265  .....ssvisvavlsfgdnvlvlgsedskvniwk 293
                s +is  +++ + + ++++ + ++++++ 
   Q: 636  dedagSYFISAVCWKSDSPTMLSANSQGTIKVLV 669
           ****999999999*****************9975 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MEEVSTGAIV PAVKPEPKPS TSTAAAVASP EPSSAPSAEE AELEKDFLCP ICMQIIKDAF 60
LTVCGHSFCY MCITTHLRNK NDCPCCSHYL TTNQLFPNFL LQKLLKKASA RQTSKNASPI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAAAGCACA GAGACAGCAC AGATTTTGTT TTGTTTTACA CTACACCGGA AGTCCGGAAC 60
AACCAACGAA GATCAGCTCT TTTTTTTTAT AAATGGAAGA GGTTTCAACG GGGGCCATCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0853--WD repeat
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00400--WD40

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0016604--C:nuclear body
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0046283--P:anthocyanin-containing compound metabolic process
GO:0006281--P:DNA repair
GO:0009649--P:entrainment of circadian clock
GO:0009640--P:photomorphogenesis
GO:0048573--P:photoperiodism, flowering
GO:0010119--P:regulation of stomatal movement
GO:0009641--P:shade avoidance

KEGG

pop:POPTR_0014s15740g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000885	Aegilops tauschii	69.65	0.00e+00	916.00
IUUC-Aml-001265	Ailuropoda melanoleuca	38.79	1.00e-124	439.00
IUUC-Atr-002460	Amborella trichopoda	72.66	0.00e+00	966.00
IUUC-Apl-003796	Anas platyrhynchos	38.52	1.00e-117	416.00
IUUC-Aca-005078	Anolis carolinensis	38.94	1.00e-123	436.00
IUUC-Aly-006014	Arabidopsis lyrata	77.10	0.00e+00	1098.00
IUUC-Ath-007636	Arabidopsis thaliana	77.40	0.00e+00	1101.00
IUUC-Bta-012595	Bos taurus	38.92	2.00e-125	442.00
IUUC-Bdi-014152	Brachypodium distachyon	67.26	0.00e+00	929.00
IUUC-Bol-016380	Brassica oleracea	75.18	0.00e+00	1060.00
IUUC-Bra-017690	Brassica rapa	74.52	0.00e+00	1040.00
IUUC-Cja-018926	Callithrix jacchus	38.86	4.00e-125	441.00
IUUC-Cfa-021088	Canis familiaris	39.32	7.00e-126	444.00
IUUC-Cpo-022442	Cavia porcellus	38.63	1.00e-118	419.00
IUUC-Csa-024119	Chlorocebus sabaeus	38.77	2.00e-124	439.00
IUUC-Cho-024883	Choloepus hoffmanni	32.13	1.00e-41	164.00
IUUC-Cin-025375	Ciona intestinalis	38.12	8.00e-122	430.00
IUUC-Cme-027350	Cyanidioschyzon merolae	44.90	3.00e-93	336.00
IUUC-Dno-029887	Dasypus novemcinctus	39.17	7.00e-125	441.00
IUUC-Dor-031110	Dipodomys ordii	51.80	3.00e-93	335.00
IUUC-Ete-033016	Echinops telfairi	51.80	5.00e-93	335.00
IUUC-Eca-034403	Equus caballus	38.52	3.00e-117	415.00
IUUC-Eeu-034690	Erinaceus europaeus	51.96	1.00e-87	317.00
IUUC-Fca-036475	Felis catus	38.68	2.00e-118	418.00
IUUC-Fal-037189	Ficedula albicollis	39.04	6.00e-124	437.00
IUUC-Gmo-039245	Gadus morhua	38.57	4.00e-123	434.00
IUUC-Gga-040806	Gallus gallus	39.17	2.00e-125	442.00
IUUC-Gac-042177	Gasterosteus aculeatus	38.80	1.00e-126	446.00
IUUC-Gma-044187	Glycine max	78.55	0.00e+00	1081.00
IUUC-Ggo-044430	Gorilla gorilla	35.47	1.00e-77	283.00
IUUC-Hsa-045853	Homo sapiens	39.32	4.00e-125	441.00
IUUC-Itr-048238	Ictidomys tridecemlineatus	51.54	9.00e-70	255.00
IUUC-Lch-050420	Latimeria chalumnae	39.19	7.00e-127	447.00
IUUC-Lpe-051219	Leersia perrieri	72.20	0.00e+00	927.00
IUUC-Loc-052728	Lepisosteus oculatus	40.25	5.00e-121	427.00
IUUC-Laf-053775	Loxodonta africana	39.72	3.00e-126	445.00
IUUC-Meu-056595	Macropus eugenii	38.95	4.00e-57	215.00
IUUC-Mtr-058555	Medicago truncatula	78.32	0.00e+00	1113.00
IUUC-Mga-059646	Meleagris gallopavo	38.50	7.00e-118	417.00
IUUC-Mmr-060990	Microcebus murinus	38.79	2.00e-124	439.00
IUUC-Mdo-062287	Monodelphis domestica	39.02	2.00e-125	442.00
IUUC-Mmu-064097	Mus musculus	38.86	2.00e-125	442.00
IUUC-Mac-065240	Musa acuminata	71.58	0.00e+00	989.00
IUUC-Mpu-066612	Mustela putorius furo	38.20	8.00e-118	417.00
IUUC-Mlu-067967	Myotis lucifugus	37.29	5.00e-116	410.00
IUUC-Nle-069543	Nomascus leucogenys	38.86	6.00e-125	441.00
IUUC-Ont-071522	Oreochromis niloticus	37.36	6.00e-124	437.00
IUUC-Oan-073409	Ornithorhynchus anatinus	38.14	1.00e-115	409.00
IUUC-Ocu-073756	Oryctolagus cuniculus	38.92	1.00e-119	423.00
IUUC-Oba-075149	Oryza barthii	69.71	0.00e+00	947.00
IUUC-Obr-076563	Oryza brachyantha	72.71	0.00e+00	943.00
IUUC-Ogl-077701	Oryza glaberrima	70.04	0.00e+00	951.00
IUUC-Ogu-078383	Oryza glumaepatula	70.04	0.00e+00	951.00
IUUC-Oin-079965	Oryza indica	69.33	0.00e+00	874.00
IUUC-Olo-080639	Oryza longistaminata	70.80	0.00e+00	932.00
IUUC-Ome-081821	Oryza meridionalis	72.79	0.00e+00	879.00
IUUC-Oni-082622	Oryza nivara	70.04	0.00e+00	951.00
IUUC-Opu-083295	Oryza punctata	70.28	0.00e+00	957.00
IUUC-Oru-084661	Oryza rufipogon	70.04	0.00e+00	951.00
IUUC-Osa-085766	Oryza sativa	70.04	0.00e+00	951.00
IUUC-Ola-086727	Oryzias latipes	38.03	8.00e-127	447.00
IUUC-Oga-088215	Otolemur garnettii	38.44	5.00e-120	424.00
IUUC-Oar-089880	Ovis aries	38.44	3.00e-120	424.00
IUUC-Ptr-090597	Pan troglodytes	39.32	4.00e-125	441.00
IUUC-Pan-091987	Papio anubis	38.86	3.00e-125	441.00
IUUC-Psi-094033	Pelodiscus sinensis	38.62	1.00e-119	422.00
IUUC-Pma-094587	Petromyzon marinus	38.84	1.00e-110	393.00
IUUC-Ppa-095401	Physcomitrella patens	61.47	0.00e+00	827.00
IUUC-Pfo-097388	Poecilia formosa	38.58	4.00e-127	448.00
IUUC-Pab-098029	Pongo abelii	39.38	2.00e-125	442.00
IUUC-Pca-100846	Procavia capensis	46.75	1.00e-104	373.00
IUUC-Ppe-101250	Prunus persica	66.08	0.00e+00	881.00
IUUC-Pva-102407	Pteropus vampyrus	38.71	1.00e-121	430.00
IUUC-Rno-105312	Rattus norvegicus	38.86	4.00e-125	441.00
IUUC-Sha-106514	Sarcophilus harrisii	46.42	1.00e-99	355.00
IUUC-Smo-109418	Selaginella moellendorffii	60.31	0.00e+00	784.00
IUUC-Sit-110248	Setaria italica	72.76	0.00e+00	951.00
IUUC-Sly-110895	Solanum lycopersicum	76.81	0.00e+00	1094.00
IUUC-Stu-112386	Solanum tuberosum	73.93	0.00e+00	1041.00
IUUC-Sar-113230	Sorex araneus	43.33	7.00e-70	257.00
IUUC-Sbi-113962	Sorghum bicolor	66.99	0.00e+00	937.00
IUUC-Ssc-115987	Sus scrofa	28.41	2.00e-25	109.00
IUUC-Tgu-116471	Taeniopygia guttata	38.95	6.00e-124	437.00
IUUC-Tsy-119415	Tarsius syrichta	37.91	5.00e-116	410.00
IUUC-Tni-120893	Tetraodon nigroviridis	47.16	6.00e-106	377.00
IUUC-Tca-121619	Theobroma cacao	78.53	0.00e+00	1114.00
IUUC-Tae-125524	Triticum aestivum	70.89	0.00e+00	944.00
IUUC-Tur-126557	Triticum urartu	70.45	0.00e+00	916.00
IUUC-Tbe-127253	Tupaia belangeri	43.61	2.00e-71	263.00
IUUC-Ttr-129100	Tursiops truncatus	38.20	1.00e-116	412.00
IUUC-Vpa-130613	Vicugna pacos	35.09	1.00e-101	363.00
IUUC-Vvi-131386	Vitis vinifera	75.89	0.00e+00	1048.00
IUUC-Xtr-132033	Xenopus tropicalis	37.63	2.00e-131	462.00
IUUC-Xma-133421	Xiphophorus maculatus	36.60	1.00e-126	446.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence