iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113962

UUCD1 version

UUC-SoB-00693

Ensembl Protein ID

Sb04g034480.1

UniProt Accession

A0A194YSG7; A0A194YSG7_SORBI

Genbank Protein ID

KXG31183.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G312600

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g034480	Sb04g034480.1	Sb04g034480.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.40e-07	31.0	67	127
E3 adaptor/Cullin RING/DCX/DWD	3.00e-24	84.9	597	634

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliq 66
           ++lCpI + l +d   +++G+++   +I  +l+++   cP +++ lt+ +l Pn  l ++ +
   Q: 67   DLLCPICMALIKDAFLTACGHSFCYMCIVTHLSNKSD-CPCCGHYLTKAQLYPNFLLDKVLK 127
           689*****************************99999.****************98866655 PP

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+  v+ ++f s++ l+s+s D t+++WD++++ +++
   Q: 597  GHKKAVSYVKFlSNNELASASTDSTLRLWDVKDNCPVR 634
           8999*******9889****************9998876 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MGDSSVAGAL VPSVPKPEPA RSGDTSVAAA ATTAALALAL PEEAGTRAAS ASPQGPPAED 60
EGPADRDLLC PICMALIKDA FLTACGHSFC YMCIVTHLSN KSDCPCCGHY LTKAQLYPNF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGACGCCACC GCCACCGCCA CCGCCTCTGC CTCCACTGCC GCCGCCTGCG CCATGGGCGA 60
CTCCTCGGTG GCCGGCGCGC TCGTGCCGTC CGTGCCCAAG CCGGAGCCCG CGCGGTCCGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00400--WD40

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000885	Aegilops tauschii	84.79	0.00e+00	1148.00
IUUC-Aml-001265	Ailuropoda melanoleuca	37.10	2.00e-118	419.00
IUUC-Atr-002460	Amborella trichopoda	70.50	0.00e+00	971.00
IUUC-Apl-003796	Anas platyrhynchos	36.74	3.00e-112	398.00
IUUC-Aca-005078	Anolis carolinensis	36.34	5.00e-115	407.00
IUUC-Aly-006014	Arabidopsis lyrata	70.50	0.00e+00	955.00
IUUC-Ath-007636	Arabidopsis thaliana	70.95	0.00e+00	961.00
IUUC-Ame-011176	Astyanax mexicanus	53.72	1.00e-37	150.00
IUUC-Bta-012595	Bos taurus	37.23	4.00e-119	421.00
IUUC-Bdi-014152	Brachypodium distachyon	82.76	0.00e+00	1204.00
IUUC-Bol-016380	Brassica oleracea	70.20	0.00e+00	947.00
IUUC-Bra-017690	Brassica rapa	67.15	0.00e+00	925.00
IUUC-Cja-018926	Callithrix jacchus	37.28	1.00e-118	419.00
IUUC-Cfa-021088	Canis familiaris	37.14	3.00e-119	422.00
IUUC-Cpo-022442	Cavia porcellus	36.75	1.00e-112	399.00
IUUC-Csa-024119	Chlorocebus sabaeus	37.08	2.00e-118	419.00
IUUC-Cin-025375	Ciona intestinalis	37.20	2.00e-112	399.00
IUUC-Cme-027350	Cyanidioschyzon merolae	40.97	2.00e-85	309.00
IUUC-Dre-028453	Danio rerio	36.93	8.00e-118	417.00
IUUC-Dno-029887	Dasypus novemcinctus	37.28	2.00e-118	419.00
IUUC-Eca-034403	Equus caballus	36.47	4.00e-112	397.00
IUUC-Eeu-034690	Erinaceus europaeus	47.59	7.00e-82	297.00
IUUC-Fca-036475	Felis catus	36.63	2.00e-112	398.00
IUUC-Fal-037189	Ficedula albicollis	37.21	6.00e-119	420.00
IUUC-Gmo-039245	Gadus morhua	36.50	1.00e-115	409.00
IUUC-Gga-040806	Gallus gallus	37.28	3.00e-119	421.00
IUUC-Gac-042177	Gasterosteus aculeatus	37.41	6.00e-118	417.00
IUUC-Gma-044187	Glycine max	70.18	0.00e+00	925.00
IUUC-Ggo-044430	Gorilla gorilla	33.33	2.00e-74	272.00
IUUC-Hsa-045853	Homo sapiens	37.17	7.00e-119	420.00
IUUC-Itr-048238	Ictidomys tridecemlineatus	47.08	6.00e-67	246.00
IUUC-Lch-050420	Latimeria chalumnae	37.78	5.00e-119	421.00
IUUC-Lpe-051219	Leersia perrieri	85.61	0.00e+00	1203.00
IUUC-Loc-052728	Lepisosteus oculatus	37.39	1.00e-110	393.00
IUUC-Laf-053775	Loxodonta africana	37.10	7.00e-119	420.00
IUUC-Meu-056595	Macropus eugenii	35.31	5.00e-53	201.00
IUUC-Mtr-058555	Medicago truncatula	66.71	0.00e+00	955.00
IUUC-Mga-059646	Meleagris gallopavo	36.74	3.00e-112	398.00
IUUC-Mmr-060990	Microcebus murinus	37.10	3.00e-118	418.00
IUUC-Mdo-062287	Monodelphis domestica	37.17	6.00e-119	420.00
IUUC-Mmu-064097	Mus musculus	37.32	2.00e-119	422.00
IUUC-Mac-065240	Musa acuminata	72.19	0.00e+00	1030.00
IUUC-Mpu-066612	Mustela putorius furo	36.63	4.00e-112	397.00
IUUC-Mlu-067967	Myotis lucifugus	36.52	1.00e-110	392.00
IUUC-Nle-069543	Nomascus leucogenys	37.17	8.00e-119	420.00
IUUC-Opr-070366	Ochotona princeps	44.39	3.00e-46	178.00
IUUC-Ont-071522	Oreochromis niloticus	36.93	2.00e-117	415.00
IUUC-Oan-073409	Ornithorhynchus anatinus	36.78	1.00e-112	399.00
IUUC-Ocu-073756	Oryctolagus cuniculus	36.86	1.00e-113	402.00
IUUC-Oba-075149	Oryza barthii	84.92	0.00e+00	1233.00
IUUC-Obr-076563	Oryza brachyantha	88.67	0.00e+00	1207.00
IUUC-Ogl-077701	Oryza glaberrima	85.24	0.00e+00	1239.00
IUUC-Ogu-078383	Oryza glumaepatula	85.24	0.00e+00	1239.00
IUUC-Oin-079965	Oryza indica	84.38	0.00e+00	1121.00
IUUC-Olo-080639	Oryza longistaminata	86.78	0.00e+00	1195.00
IUUC-Ome-081821	Oryza meridionalis	88.84	0.00e+00	1136.00
IUUC-Oni-082622	Oryza nivara	85.24	0.00e+00	1239.00
IUUC-Opu-083295	Oryza punctata	86.62	0.00e+00	1245.00
IUUC-Oru-084661	Oryza rufipogon	85.24	0.00e+00	1239.00
IUUC-Osa-085766	Oryza sativa	85.24	0.00e+00	1239.00
IUUC-Ola-086727	Oryzias latipes	37.35	7.00e-120	423.00
IUUC-Oga-088215	Otolemur garnettii	36.71	7.00e-114	404.00
IUUC-Oar-089880	Ovis aries	36.71	5.00e-114	404.00
IUUC-Ptr-090597	Pan troglodytes	37.17	7.00e-119	420.00
IUUC-Pan-091987	Papio anubis	37.17	6.00e-119	421.00
IUUC-Psi-094033	Pelodiscus sinensis	37.35	2.00e-114	405.00
IUUC-Pma-094587	Petromyzon marinus	35.39	4.00e-102	364.00
IUUC-Ppa-095401	Physcomitrella patens	61.99	0.00e+00	806.00
IUUC-Pfo-097388	Poecilia formosa	36.28	1.00e-115	410.00
IUUC-Pab-098029	Pongo abelii	37.17	5.00e-119	421.00
IUUC-Pop-099319	Populus trichocarpa	70.20	0.00e+00	940.00
IUUC-Pca-100846	Procavia capensis	43.45	4.00e-99	355.00
IUUC-Ppe-101250	Prunus persica	63.17	0.00e+00	847.00
IUUC-Pva-102407	Pteropus vampyrus	37.03	1.00e-115	409.00
IUUC-Rno-105312	Rattus norvegicus	36.88	8.00e-119	420.00
IUUC-Sha-106514	Sarcophilus harrisii	43.21	2.00e-94	338.00
IUUC-Smo-109418	Selaginella moellendorffii	58.54	0.00e+00	773.00
IUUC-Sit-110248	Setaria italica	90.65	0.00e+00	1268.00
IUUC-Sly-110895	Solanum lycopersicum	67.86	0.00e+00	976.00
IUUC-Stu-112386	Solanum tuberosum	64.28	0.00e+00	912.00
IUUC-Ssc-115987	Sus scrofa	26.67	3.00e-24	105.00
IUUC-Tgu-116471	Taeniopygia guttata	37.06	4.00e-118	417.00
IUUC-Tru-118231	Takifugu rubripes	45.00	5.00e-100	357.00
IUUC-Tsy-119415	Tarsius syrichta	36.39	9.00e-111	393.00
IUUC-Tni-120893	Tetraodon nigroviridis	45.00	4.00e-100	358.00
IUUC-Tca-121619	Theobroma cacao	70.22	0.00e+00	952.00
IUUC-Tae-125524	Triticum aestivum	81.40	0.00e+00	1185.00
IUUC-Tur-126557	Triticum urartu	85.63	0.00e+00	1148.00
IUUC-Ttr-129100	Tursiops truncatus	36.82	2.00e-110	392.00
IUUC-Vpa-130613	Vicugna pacos	33.72	4.00e-96	344.00
IUUC-Vvi-130880	Vitis vinifera	75.39	0.00e+00	965.00
IUUC-Xtr-132033	Xenopus tropicalis	37.98	5.00e-125	441.00
IUUC-Xma-133421	Xiphophorus maculatus	36.43	3.00e-116	412.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence