iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006604

UUCD1 version

UUC-ArT-01183

Ensembl Protein ID

AT1G67180.1

UniProt Accession

Q9ZW89; Q9ZW89_ARATH

Genbank Protein ID

AAD10663.1; AEE34609.1; ANM59700.1

Protein Name

F5A8.9 protein; Zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein

Genbank Nucleotide ID

AC004146; CP002684; CP002684

Gene Name

At1g67180; F5A8.9; F5A8_9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G67180	AT1G67180.1	AT1G67180.1
AT1G67180	AT1G67180.6	AT1G67180.6

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	24255109

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	1.50e-09	39.1	300	345

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iC+++f+    +lpCgH f+ +C+qkw ++  s++k+ +CPlC+
   Q: 300  CIICWTEFSSSRGILPCGHRFCYSCIQKWADRLVSERKKTTCPLCK 345
           ********6633479******************************7 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MENVVATVSG YHGSDRFKLI KLISHSGASY VGAMSRSITH LVCWKFEGKK YDLAKKFGTV 60
VVNHRWVEEC VKEGRRVSET PYMFDSGEEV GPLMIELPAV SEEAKVTKKV NKASETFDKY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAATTTTTT GATATTTTTA AATTCCCGCC AGACTCCCAT CTAAATTTCG CTTCTCCTTT 60
AGCCATTTGC TTCCATTGTC ACGGACCTGA GAAAGAAGGG GAAGAGAGAT TGAAGCAAAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001357--BRCT_dom
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50172--BRCT
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF12738--PTCB-BRCT
PF00097--zf-C3HC4

SMART

SM00292--BRCT
SM00184--RING

Gene Ontology

GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000133	Aegilops tauschii	50.87	3.00e-49	189.00
IUUC-Atr-003095	Amborella trichopoda	49.01	4.00e-41	161.00
IUUC-Apl-003562	Anas platyrhynchos	40.00	3.00e-10	58.20
IUUC-Aly-006322	Arabidopsis lyrata	89.68	0.00e+00	855.00
IUUC-Ang-009518	Aspergillus niger	33.33	4.00e-08	53.10
IUUC-Bdi-014816	Brachypodium distachyon	52.27	2.00e-48	186.00
IUUC-Bol-016032	Brassica oleracea	72.83	0.00e+00	682.00
IUUC-Bra-016767	Brassica rapa	71.89	0.00e+00	673.00
IUUC-Cre-022845	Chlamydomonas reinhardtii	30.77	3.00e-06	42.00
IUUC-Gma-043447	Glycine max	41.96	5.00e-88	317.00
IUUC-Lpe-050685	Leersia perrieri	65.31	4.00e-36	145.00
IUUC-Mtr-058640	Medicago truncatula	39.29	3.00e-85	308.00
IUUC-Mac-065152	Musa acuminata	36.73	1.00e-82	300.00
IUUC-Oba-075202	Oryza barthii	53.85	3.00e-52	198.00
IUUC-Obr-076294	Oryza brachyantha	51.43	1.00e-50	193.00
IUUC-Ogl-077543	Oryza glaberrima	53.85	3.00e-52	198.00
IUUC-Oin-079950	Oryza indica	53.85	2.00e-52	199.00
IUUC-Olo-080275	Oryza longistaminata	53.71	1.00e-53	203.00
IUUC-Ome-081398	Oryza meridionalis	53.85	8.00e-53	200.00
IUUC-Oru-084583	Oryza rufipogon	67.35	1.00e-37	150.00
IUUC-Osa-086181	Oryza sativa	53.99	1.00e-50	193.00
IUUC-Pop-099757	Populus trichocarpa	45.95	1.00e-110	392.00
IUUC-Ppe-101454	Prunus persica	42.44	3.00e-91	328.00
IUUC-Smo-109143	Selaginella moellendorffii	49.46	6.00e-27	114.00
IUUC-Sit-110027	Setaria italica	53.80	2.00e-49	189.00
IUUC-Sly-111644	Solanum lycopersicum	38.71	1.00e-51	196.00
IUUC-Stu-112802	Solanum tuberosum	40.48	6.00e-95	340.00
IUUC-Sbi-114227	Sorghum bicolor	56.13	5.00e-50	189.00
IUUC-Sre-115041	Sporisorium reilianum	29.90	6.00e-06	44.30
IUUC-Tca-121547	Theobroma cacao	50.00	1.00e-53	203.00
IUUC-Tae-123838	Triticum aestivum	43.95	1.00e-50	194.00
IUUC-Tur-126024	Triticum urartu	43.31	7.00e-32	131.00
IUUC-Uma-129563	Ustilago maydis	27.59	3.00e-06	45.80
IUUC-Vvi-131693	Vitis vinifera	42.32	9.00e-99	353.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence