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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105606
Ensembl Protein ID ENSRNOP00000001820.3
UniProt Accession D3ZI16; D3ZI16_RAT
Genbank Protein ID EDL83891.1
Protein Name COP9 (Constitutive photomorphogenic) homolog, subunit 6 (Arabidopsis thaliana) (Predicted), isoform CRA_a; COP9 signalosome subunit 6
Genbank Nucleotide ID AABR07035541
Gene Name Cops6; Cops6_predicted; rCG_55951
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000001346.4 ENSRNOT00000001820.4 ENSRNOP00000001820.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAFPhosphositePlus
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
DUB/JAMM 91.92 9.00e-154 540.00 IUUC-Dre-028843
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MERGGPWLAG AGKMAAAAAA AAAAAAAAAN GSGGSSGMEV DAAVPSVMAS GVTGSVSVAL 60
HPLVILNISD HWIRMRSQEG RPMQVIGALI GKQEGRNIEV MNSFELLSHT VEKKIIIDKE 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105606|DUB,JAMM|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AGATGGAAAG GGGCGGGCCG TGGCTGGCGG GCGCGGGGAA AATGGCGGCG GCGGCGGCGG 60
CGGCTGCGGC GGCGGCGGCG GCGGCGGCGA ACGGGAGCGG AGGCAGCAGC GGCATGGAGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105606|DUB,JAMM|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0732--Signal
KW-0812--Transmembrane
KW-1133--Transmembrane helix
Interpro

IPR000555--JAMM/MPN+_dom
IPR033859--MPN_CSN6
IPR024969--Rpn11/EIF3F_C
Pfam

PF01398--JAB
PF13012--MitMem_reg
SMART

SM00232--JAB_MPN
Gene Ontology

GO:0008180--C:COP9 signalosome
GO:0070062--C:extracellular exosome
GO:0016021--C:integral component of membrane
GO:0005654--C:nucleoplasm
GO:0000338--P:protein deneddylation
KEGG rno:304343
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000900 Aegilops tauschii 36.72 5.00e-56 211.00
IUUC-Aml-001678 Ailuropoda melanoleuca 99.35 2.00e-173 601.00
IUUC-Atr-002442 Amborella trichopoda 38.85 6.00e-50 190.00
IUUC-Aca-004366 Anolis carolinensis 71.91 9.00e-93 332.00
IUUC-Aly-005748 Arabidopsis lyrata 38.51 5.00e-60 224.00
IUUC-Ath-006830 Arabidopsis thaliana 38.19 4.00e-58 218.00
IUUC-Acl-008087 Aspergillus clavatus 29.97 4.00e-26 112.00
IUUC-Afl-008629 Aspergillus flavus 28.36 7.00e-21 94.70
IUUC-Afu-008973 Aspergillus fumigatus 30.00 3.00e-29 122.00
IUUC-Ani-009239 Aspergillus nidulans 27.08 5.00e-20 91.70
IUUC-Ang-009845 Aspergillus niger 31.33 7.00e-31 128.00
IUUC-Aor-010137 Aspergillus oryzae 29.01 4.00e-24 105.00
IUUC-Ate-010588 Aspergillus terreus 36.36 9.00e-23 101.00
IUUC-Ame-011532 Astyanax mexicanus 93.88 2.00e-52 196.00
IUUC-Bgr-012126 Blumeria graminis 30.21 3.00e-20 92.80
IUUC-Bta-012891 Bos taurus 99.35 2.00e-173 600.00
IUUC-Bci-013650 Botrytis cinerea 28.84 2.00e-28 120.00
IUUC-Bdi-014189 Brachypodium distachyon 40.69 1.00e-56 213.00
IUUC-Bol-015194 Brassica oleracea 37.62 2.00e-59 222.00
IUUC-Bra-017180 Brassica rapa 38.11 2.00e-58 219.00
IUUC-Cel-018511 Caenorhabditis elegans 33.33 3.00e-31 129.00
IUUC-Cja-019862 Callithrix jacchus 98.39 1.00e-172 598.00
IUUC-Cfa-020552 Canis familiaris 99.35 9.00e-173 599.00
IUUC-Cpo-022433 Cavia porcellus 99.03 1.00e-172 598.00
IUUC-Cre-022699 Chlamydomonas reinhardtii 35.11 1.00e-46 180.00
IUUC-Csa-023484 Chlorocebus sabaeus 98.39 2.00e-172 598.00
IUUC-Cho-024874 Choloepus hoffmanni 85.57 2.00e-128 451.00
IUUC-Cin-025747 Ciona intestinalis 58.33 5.00e-101 360.00
IUUC-Csv-025914 Ciona savignyi 59.00 2.00e-104 372.00
IUUC-Cgl-026665 Colletotrichum gloeosporioides 28.35 2.00e-26 113.00
IUUC-Cne-026818 Cryptococcus neoformans 35.71 3.00e-49 188.00
IUUC-Dre-028843 Danio rerio 91.92 9.00e-165 572.00
IUUC-Dno-029674 Dasypus novemcinctus 99.35 4.00e-173 600.00
IUUC-Dme-032196 Drosophila melanogaster 61.95 2.00e-116 412.00
IUUC-Ete-032593 Echinops telfairi 72.56 1.00e-73 268.00
IUUC-Eca-033933 Equus caballus 99.35 1.00e-173 602.00
IUUC-Fca-035946 Felis catus 99.35 2.00e-173 600.00
IUUC-Fso-038175 Fusarium solani 26.23 3.00e-22 99.40
IUUC-Gmo-038747 Gadus morhua 90.91 1.00e-159 555.00
IUUC-Gac-042199 Gasterosteus aculeatus 90.91 6.00e-160 556.00
IUUC-Gma-043702 Glycine max 40.13 3.00e-61 228.00
IUUC-Ggo-044978 Gorilla gorilla 99.00 8.00e-170 589.00
IUUC-Hsa-045797 Homo sapiens 99.02 3.00e-173 600.00
IUUC-Hvu-047511 Hordeum vulgare 39.68 1.00e-59 223.00
IUUC-Itr-048615 Ictidomys tridecemlineatus 99.35 3.00e-174 603.00
IUUC-Lch-049546 Latimeria chalumnae 87.11 1.00e-129 455.00
IUUC-Lpe-051207 Leersia perrieri 39.60 4.00e-59 221.00
IUUC-Loc-052106 Lepisosteus oculatus 92.86 5.00e-162 563.00
IUUC-Lma-053122 Leptosphaeria maculans 26.04 4.00e-24 106.00
IUUC-Laf-054454 Loxodonta africana 99.66 9.00e-169 585.00
IUUC-Mcc-054679 Macaca mulatta 99.35 6.00e-173 599.00
IUUC-Meu-056427 Macropus eugenii 95.45 2.00e-165 574.00
IUUC-Mor-057093 Magnaporthe oryzae 24.13 7.00e-24 104.00
IUUC-Mtr-058343 Medicago truncatula 40.32 1.00e-60 226.00
IUUC-Mla-059002 Melampsora laricipopulina 36.04 2.00e-42 166.00
IUUC-Mvi-060487 Microbotryum violaceum 35.86 1.00e-51 196.00
IUUC-Mmr-060577 Microcebus murinus 99.35 5.00e-173 600.00
IUUC-Mdo-061918 Monodelphis domestica 99.03 1.00e-172 598.00
IUUC-Mmu-063355 Mus musculus 99.67 1.00e-174 605.00
IUUC-Mac-064465 Musa acuminata 41.39 3.00e-62 231.00
IUUC-Mpu-066813 Mustela putorius furo 99.35 5.00e-173 599.00
IUUC-Mlu-067500 Myotis lucifugus 99.03 1.00e-172 598.00
IUUC-Nfi-068452 Neosartorya fischeri 28.98 3.00e-29 122.00
IUUC-Nle-070166 Nomascus leucogenys 99.03 1.00e-172 598.00
IUUC-Opr-071028 Ochotona princeps 99.35 4.00e-173 600.00
IUUC-Ont-072575 Oreochromis niloticus 92.86 3.00e-162 563.00
IUUC-Ocu-074744 Oryctolagus cuniculus 98.70 2.00e-172 598.00
IUUC-Oba-075665 Oryza barthii 39.47 2.00e-59 222.00
IUUC-Obr-076094 Oryza brachyantha 40.16 5.00e-51 194.00
IUUC-Ogl-077223 Oryza glaberrima 39.47 2.00e-59 222.00
IUUC-Ogu-077975 Oryza glumaepatula 39.47 2.00e-59 222.00
IUUC-Oin-079690 Oryza indica 39.14 7.00e-57 214.00
IUUC-Ome-081114 Oryza meridionalis 39.60 1.00e-58 219.00
IUUC-Oni-082275 Oryza nivara 39.47 3.00e-58 218.00
IUUC-Opu-083281 Oryza punctata 39.34 2.00e-58 219.00
IUUC-Oru-084767 Oryza rufipogon 39.47 2.00e-58 219.00
IUUC-Osa-085506 Oryza sativa 39.47 2.00e-58 219.00
IUUC-Ola-086468 Oryzias latipes 92.46 9.00e-162 562.00
IUUC-Oga-088732 Otolemur garnettii 98.08 2.00e-172 598.00
IUUC-Oar-089714 Ovis aries 99.67 1.00e-170 591.00
IUUC-Ptr-091383 Pan troglodytes 98.70 6.00e-172 596.00
IUUC-Pan-091752 Papio anubis 98.39 2.00e-172 598.00
IUUC-Psi-094080 Pelodiscus sinensis 92.36 2.00e-167 581.00
IUUC-Pma-094665 Petromyzon marinus 63.27 2.00e-28 117.00
IUUC-Ppa-095312 Physcomitrella patens 42.71 8.00e-68 250.00
IUUC-Pfo-096180 Poecilia formosa 92.53 3.00e-162 564.00
IUUC-Pab-098521 Pongo abelii 99.03 9.00e-173 598.00
IUUC-Pop-099014 Populus trichocarpa 41.47 1.00e-61 229.00
IUUC-Pca-100331 Procavia capensis 98.84 3.00e-155 540.00
IUUC-Ppe-101223 Prunus persica 36.31 2.00e-54 206.00
IUUC-Pva-103061 Pteropus vampyrus 99.35 4.00e-173 600.00
IUUC-Pgr-103302 Puccinia graminis 33.98 8.00e-39 154.00
IUUC-Ptt-103773 Puccinia triticina 35.29 5.00e-44 171.00
IUUC-Pte-104297 Pyrenophora teres 34.16 6.00e-22 98.60
IUUC-Sha-106621 Sarcophilus harrisii 99.03 6.00e-173 599.00
IUUC-Ssl-108446 Sclerotinia sclerotiorum 29.17 6.00e-27 115.00
IUUC-Smo-108791 Selaginella moellendorffii 42.32 3.00e-63 234.00
IUUC-Sit-110800 Setaria italica 39.67 5.00e-58 217.00
IUUC-Sly-111003 Solanum lycopersicum 39.54 4.00e-60 224.00
IUUC-Stu-112083 Solanum tuberosum 39.80 1.00e-60 226.00
IUUC-Sar-113677 Sorex araneus 81.16 6.00e-27 114.00
IUUC-Sbi-113936 Sorghum bicolor 38.96 2.00e-57 215.00
IUUC-Sre-114955 Sporisorium reilianum 35.36 1.00e-50 193.00
IUUC-Tru-118518 Takifugu rubripes 91.88 1.00e-161 562.00
IUUC-Tsy-119285 Tarsius syrichta 100.00 8.00e-24 103.00
IUUC-Tni-120511 Tetraodon nigroviridis 92.21 3.00e-162 564.00
IUUC-Tca-121233 Theobroma cacao 38.85 7.00e-60 223.00
IUUC-Tae-123297 Triticum aestivum 39.68 7.00e-60 224.00
IUUC-Tur-126485 Triticum urartu 32.80 9.00e-42 163.00
IUUC-Tme-127071 Tuber melanosporum 32.42 3.00e-34 139.00
IUUC-Tbe-127457 Tupaia belangeri 95.78 4.00e-161 560.00
IUUC-Ttr-128708 Tursiops truncatus 96.01 8.00e-162 562.00
IUUC-Uma-129646 Ustilago maydis 35.96 3.00e-53 202.00
IUUC-Vpa-130606 Vicugna pacos 96.43 4.00e-75 274.00
IUUC-Vvi-131045 Vitis vinifera 39.48 5.00e-60 224.00
IUUC-Xtr-132674 Xenopus tropicalis 91.56 1.00e-171 595.00
IUUC-Xma-133413 Xiphophorus maculatus 92.21 6.00e-162 563.00
IUUC-Yli-134661 Yarrowia lipolytica 36.97 2.00e-31 129.00
IUUC-Zma-135166 Zea mays 39.16 1.00e-57 216.00
Created Date 25-Jun-2017

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