iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-042823

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000846

Gene Name

GLYMA_13G170000

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA13G23910	GLYMA13G23910.1	GLYMA13G23910.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	6.20e-11	43.9	1273	1319

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           vC+vCg   +d+ s++ C+ C+  +H  Cl+++     p+ + w+Cp+C 
   Q: 1273 VCKVCGIDRDDD-SVLLCDTCDAEYHTYCLNPP-LARIPEGN-WYCPSCV 1319
           8******99987.7*******************.*******6.******5 PP

Organism

Glycine max

Protein Sequence
(Fasta)

MIMELSDSTG GDRNLNAPPP LPPPHNNHNQ DARSGLGIDL NEIPSPSSSF PETLPGSVTV 60
DVVRSYHDNP APPPGGPAAL PRSGSSPCAA CAKPSPAAGS HHQLVVCDGC ERGFHLACAG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATAGAAACTG AGAAAAGAGA CTAACGAGTT TACCTGCGAT ACAGATACGG TCCCATCCCT 60
GTCTTTCCCT TTTCTTTTTC TCACATTTCA TTTCTCTCTC TTCTCACTTT CTCTCTCTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001487--Bromodomain
IPR016177--DNA-bd_dom
IPR003888--FYrich_N
IPR001739--Methyl_CpG_DNA-bd
IPR028942--WHIM1_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50014--BROMODOMAIN_2
PS51542--FYRN
PS50982--MBD
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF00439--Bromodomain
PF01429--MBD
PF00628--PHD
PF15612--WHIM1

SMART

SM00249--PHD

Gene Ontology

GO:0005720--C:nuclear heterochromatin
GO:0003677--F:DNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0010216--P:maintenance of DNA methylation
GO:0016567--P:protein ubiquitination
GO:0090308--P:regulation of methylation-dependent chromatin silencing

KEGG

gmx:100820223

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000077	Aegilops tauschii	44.26	0.00e+00	676.00
IUUC-Atr-002838	Amborella trichopoda	40.35	0.00e+00	1379.00
IUUC-Aly-006097	Arabidopsis lyrata	44.59	0.00e+00	1556.00
IUUC-Ath-007218	Arabidopsis thaliana	44.75	0.00e+00	1529.00
IUUC-Bdi-014742	Brachypodium distachyon	38.41	2.00e-164	573.00
IUUC-Bol-015336	Brassica oleracea	44.34	0.00e+00	1541.00
IUUC-Bra-017998	Brassica rapa	44.15	0.00e+00	1528.00
IUUC-Hvu-047583	Hordeum vulgare	34.10	2.00e-137	483.00
IUUC-Lpe-050785	Leersia perrieri	40.57	0.00e+00	1179.00
IUUC-Mtr-058285	Medicago truncatula	71.15	0.00e+00	2858.00
IUUC-Mac-065069	Musa acuminata	42.06	0.00e+00	1065.00
IUUC-Obr-076343	Oryza brachyantha	39.59	0.00e+00	1250.00
IUUC-Opu-083363	Oryza punctata	42.24	0.00e+00	1272.00
IUUC-Tae-123821	Triticum aestivum	39.43	0.00e+00	1165.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence