iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114225

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G107200

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g008750	Sb04g008750.1	Sb04g008750.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.00e-76	259.1	438	742

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 2    GlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqqDaqEfl 96
           Gl N gN+CY N+vLQcL+ +++l+ +ll   ++++++     +++ +l+++l++  + l  ++ +  sp+++l+ l+++  ++ g  q+Da+Efl
   Q: 438  GLFNCGNSCYANAVLQCLMCTKPLMIYLLLrLHSKDCS-----SKNWCLMCELEQYASTL-RESGGPLSPSRILSNLRNIGCRLGGGTQEDAHEFL 527
           9*************************999835555555.....5667**********999.9999******************************* PP
   S: 97   aflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkeetkkeslqdcLe 192
           ++l+ +++ ++                  l  e+  ++  ++++li+++F+g+lks++kcl+c ++s+r+e+ +dl+l+++g  e    slqd+L 
   Q: 528  RHLVMSMQAAC---------------LDGLGGEKHVEPSLQETTLIQQMFGGRLKSKVKCLRCYHESERYENIMDLTLEIHGWVE----SLQDALT 604
           ***********...............235666688999********************************************997....8****** PP
   S: 193  sftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfctspeekqkekkkYeLiavvvHsG 288
           +ft++e l+g+n+y+c +c ++++a+k+l+++++P++L+l LkRf    + ++  kink+v+fp++Ld+ pf+t + ++   +  Y L+avvvH  
   Q: 605  QFTAPEDLDGDNMYKCGRCSAYVKARKQLSVHEVPNILTLVLKRF----QSGKYGKINKCVTFPDMLDMVPFVTGSGDN---PPLYFLYAVVVHVD 693
           *********************************************....346678********************6655...9***********88 PP
   S: 289  ...slssGHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
               + sGHY++yvk+ +g Wl++dDs+V++v+ ++v +   + aY+lfY r
   Q: 694  tenASFSGHYISYVKDMQGTWLRIDDSEVQVVSVNQVMS---EGAYMLFYLR 742
           5423559********************************...********76 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MLQPREADVP ALFLVFIVLP VVAYFLLGRW HDAASKKARV SVLAHRAAEE AYREETMACP 60
DIIPPGPSLR TMPYFRPAPS LRQEYHECAT CHAPAKTRCS RCKSVRYCSG KCQIVHWRQG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTCCAAC CAAGGGAAGC TGATGTGCCT GCACTCTTTC TTGTCTTCAT TGTACTTCCC 60
GTGGTAGCTT ATTTTCTTCT TGGGAGATGG CATGATGCTG CAAGTAAGAA GGCAAGGGTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

sbi:SORBI_04g008750

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000426	Aegilops tauschii	75.11	0.00e+00	1014.00
IUUC-Atr-003062	Amborella trichopoda	51.56	5.00e-156	543.00
IUUC-Aly-006034	Arabidopsis lyrata	60.47	2.00e-171	595.00
IUUC-Ath-007599	Arabidopsis thaliana	62.20	1.00e-169	589.00
IUUC-Bdi-014717	Brachypodium distachyon	79.10	0.00e+00	1503.00
IUUC-Bol-015616	Brassica oleracea	44.54	0.00e+00	669.00
IUUC-Bra-017955	Brassica rapa	44.09	0.00e+00	667.00
IUUC-Gma-043399	Glycine max	62.75	0.00e+00	637.00
IUUC-Hvu-047393	Hordeum vulgare	72.30	0.00e+00	754.00
IUUC-Lpe-051615	Leersia perrieri	76.25	0.00e+00	1390.00
IUUC-Mtr-058164	Medicago truncatula	47.48	0.00e+00	709.00
IUUC-Mac-064719	Musa acuminata	50.57	0.00e+00	811.00
IUUC-Oba-075960	Oryza barthii	74.63	0.00e+00	1376.00
IUUC-Obr-076330	Oryza brachyantha	80.31	0.00e+00	1455.00
IUUC-Ogl-077370	Oryza glaberrima	79.26	0.00e+00	1432.00
IUUC-Ogu-078615	Oryza glumaepatula	74.63	0.00e+00	1375.00
IUUC-Oin-079409	Oryza indica	79.31	0.00e+00	1194.00
IUUC-Olo-080550	Oryza longistaminata	73.31	0.00e+00	1224.00
IUUC-Ome-081508	Oryza meridionalis	74.33	0.00e+00	1397.00
IUUC-Oni-082740	Oryza nivara	74.63	0.00e+00	1375.00
IUUC-Opu-083669	Oryza punctata	72.09	0.00e+00	1288.00
IUUC-Oru-084502	Oryza rufipogon	74.63	0.00e+00	1375.00
IUUC-Osa-085475	Oryza sativa	79.26	0.00e+00	1431.00
IUUC-Pop-099645	Populus trichocarpa	45.17	2.00e-167	581.00
IUUC-Ppe-101942	Prunus persica	48.24	0.00e+00	736.00
IUUC-Sit-109825	Setaria italica	90.81	0.00e+00	1735.00
IUUC-Sly-111027	Solanum lycopersicum	57.12	0.00e+00	629.00
IUUC-Tca-121618	Theobroma cacao	63.94	0.00e+00	672.00
IUUC-Tae-123144	Triticum aestivum	77.83	0.00e+00	976.00
IUUC-Tur-126234	Triticum urartu	75.11	0.00e+00	1305.00
IUUC-Vvi-131600	Vitis vinifera	57.19	0.00e+00	687.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence