iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-017759

Ensembl Protein ID

Bra029642.1-P

UniProt Accession

M4ELH4; M4ELH4_BRARP

Protein Name

RING-type E3 ubiquitin transferase

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra029642	Bra029642.1	Bra029642.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	7.70e-32	110.2	74	145

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +peef+Cp+s+elMrdPvvl+sG+tyd+  I+kwl+sg++tcP+t+q l ++ l+Pnl +r++i++wc++ +
   Q: 74   CPEEFRCPLSKELMRDPVVLASGQTYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLLIRDMISKWCKTVG 145
           79******************************************************************9976 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MAKTDAFDSD PTAIAKAKEL KREMKKLLMN MEEEDGLSVQ TIDHLQEALS AFKQATMRKM 60
ARSSSLEMLE TVSCPEEFRC PLSKELMRDP VVLASGQTYD KLFIQKWLSS GNRTCPKTQQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCAAAGA CCGATGCATT CGATTCGGAT CCGACGGCGA TTGCCAAAGC TAAGGAACTG 60
AAGCGTGAGA TGAAGAAGCT TCTGATGAAC ATGGAGGAAG AAGATGGTTT GAGCGTTCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000164	Aegilops tauschii	43.94	3.00e-84	305.00
IUUC-Aly-006420	Arabidopsis lyrata	87.90	0.00e+00	830.00
IUUC-Ath-007457	Arabidopsis thaliana	87.69	0.00e+00	811.00
IUUC-Bdi-014069	Brachypodium distachyon	51.79	4.00e-106	378.00
IUUC-Bol-015764	Brassica oleracea	97.40	0.00e+00	894.00
IUUC-Hvu-047411	Hordeum vulgare	47.53	3.00e-81	295.00
IUUC-Lpe-050825	Leersia perrieri	50.90	5.00e-107	380.00
IUUC-Mtr-057877	Medicago truncatula	55.36	3.00e-137	481.00
IUUC-Mac-065616	Musa acuminata	50.32	1.00e-109	389.00
IUUC-Oba-075311	Oryza barthii	50.93	3.00e-101	361.00
IUUC-Obr-076232	Oryza brachyantha	50.67	1.00e-101	362.00
IUUC-Ogl-077647	Oryza glaberrima	50.77	4.00e-107	380.00
IUUC-Ogu-078448	Oryza glumaepatula	50.77	2.00e-107	382.00
IUUC-Oin-079693	Oryza indica	50.93	4.00e-101	360.00
IUUC-Olo-080462	Oryza longistaminata	51.16	4.00e-107	380.00
IUUC-Ome-081796	Oryza meridionalis	51.16	7.00e-107	380.00
IUUC-Oni-082158	Oryza nivara	50.77	3.00e-107	382.00
IUUC-Opu-084131	Oryza punctata	51.42	1.00e-107	383.00
IUUC-Oru-084335	Oryza rufipogon	50.77	3.00e-107	382.00
IUUC-Osa-085556	Oryza sativa	50.77	3.00e-107	381.00
IUUC-Pop-099806	Populus trichocarpa	62.55	3.00e-163	567.00
IUUC-Sit-110812	Setaria italica	50.13	1.00e-101	362.00
IUUC-Tca-121080	Theobroma cacao	62.66	2.00e-164	572.00
IUUC-Tae-123657	Triticum aestivum	47.80	5.00e-90	324.00
IUUC-Tur-126060	Triticum urartu	43.76	4.00e-85	308.00
IUUC-Vvi-131168	Vitis vinifera	60.39	1.00e-156	545.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence