iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111398

Ensembl Protein ID

Solyc12g006940.1.1

UniProt Accession

K4DBN1; K4DBN1_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc12g006940.1	Solyc12g006940.1.1	Solyc12g006940.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	8.70e-08	33.3	357	398

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl  +   d+++ lpC H+fh++C+ kw       + +++CPlC+
   Q: 357  CCICLAKYedNDELRELPCSHFFHTQCVDKW------LKINATCPLCK 398
           ****999976455******************......**********7 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MAVTSEELNQ ENPTDRFPLL MEQAESRERN EHVIDVEQGS SPSSSGSSDN DSPHELEIPN 60
HENRPSNRHS VSSSSNESDS HSPSSARRAD GSDRRWSPFN TLLWLSIELI FTLGQIGAAV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTGTTA CCTCGGAAGA ACTTAATCAA GAGAACCCAA CCGACAGATT TCCTTTGCTC 60
ATGGAGCAAG CAGAAAGTCG TGAGAGGAAT GAACATGTTA TTGATGTAGA ACAAGGAAGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING
SM00744--RINGv

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

sly:101245430

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000618	Aegilops tauschii	54.45	2.00e-108	385.00
IUUC-Atr-002558	Amborella trichopoda	52.53	4.00e-98	350.00
IUUC-Cme-027312	Cyanidioschyzon merolae	28.18	6.00e-21	94.40
IUUC-Gma-043870	Glycine max	55.21	2.00e-127	447.00
IUUC-Hvu-047447	Hordeum vulgare	54.96	5.00e-110	390.00
IUUC-Lpe-050851	Leersia perrieri	53.54	4.00e-108	384.00
IUUC-Mac-064587	Musa acuminata	55.38	9.00e-91	326.00
IUUC-Oba-075730	Oryza barthii	54.38	3.00e-108	384.00
IUUC-Obr-076189	Oryza brachyantha	60.62	2.00e-107	381.00
IUUC-Ogl-077454	Oryza glaberrima	54.38	3.00e-108	384.00
IUUC-Ogu-078902	Oryza glumaepatula	54.64	2.00e-109	387.00
IUUC-Oin-079324	Oryza indica	54.38	2.00e-108	384.00
IUUC-Olo-080365	Oryza longistaminata	54.64	3.00e-109	387.00
IUUC-Oni-082514	Oryza nivara	54.38	3.00e-108	384.00
IUUC-Opu-083647	Oryza punctata	54.38	5.00e-109	387.00
IUUC-Pma-094624	Petromyzon marinus	47.92	2.00e-11	64.30
IUUC-Ppe-101804	Prunus persica	56.87	1.00e-121	429.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence