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Tag Content
iUUCD ID IUUC-Aly-005711
Ensembl Protein ID fgenesh2_kg.6__2337__AT5G23430.1
UniProt Accession D7M297; D7M297_ARALL
Genbank Protein ID EFH50389.1
Protein Name Katanin p80 WD40 repeat-containing subunit B1 homolog
Genbank Nucleotide ID GL348718
Gene Name ARALYDRAFT_489203
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh2_kg.6__2337__AT5G23430.1 fgenesh2_kg.6__2337__AT5G23430.1 fgenesh2_kg.6__2337__AT5G23430.1
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.80e-35 119.5 141 178
UBD/Beta-Prp 2.20e-58 198.5 14 252
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt +v+ l+f +d + +vsG+ D+ +kvWDl+ g+ll
   Q: 141  GHTRGVNVLRFtPDgRWVVSGGEDNIVKVWDLTAGKLL 178
           8***********99999****************99976 PP
   

   UBD/Beta-Prp
   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlst 83
           +h++ ++c+k+  +++++l+tg++d+++ +w + +++++ sl+gh++++ +v+f+ ++ + + g+  +tik+wdl+ 
   Q: 14   AHSAAVNCLKIgRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEE 90
           789999*****99*********************************************999999999********** PP
   S: 84   gkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrt 160
            k+v+tl+gh ++  s++f+p g++++sGs d  +++wd++++ c++ t +gh++ vn++++ pdg+ +vsG+ D++
   Q: 91   AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNVLRFTPDGRWVVSGGEDNI 166
           ***********************************************.***************************** PP
   S: 161  vrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderl 237
           v++Wdl  gkll+++++ h+++++sl+f++  + l++gs d+tvk+wdl+t e + +    t+ v+++ f p+++ +
   Q: 167  VKVWDLTAGKLLTEFKS-HEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTV 242
           ****************9.*********************************************************99 PP
   S: 238  vsgssDgsiri 248
           ++g   +s++i
   Q: 243  LCGL-QESLKI 252
           9996.445555 PP
   
Organism Arabidopsis lyrata
Functional Description
(View)

Functional Description


     May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.
 May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.
Protein Sequence
(Fasta)
MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS 60
GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH RSNCISVDFH PFGEFFASGS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Aly-005711|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TCTCTCTCTC TCTGCGCCTC CCTTTTTGCT TCTCTCTCTC TCTTCTTCTT CTTCTTCCTT 60
GTGCTCTGCT CTCTGTCAAT CTCTCTCTCC TTTTTTACTT CGCCATTGGA GAAAAGTGAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Aly-005711|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis lyrata
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF13925--Katanin_con80
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing
KEGG aly:ARALYDRAFT_489203
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000954 Aegilops tauschii 54.07 5.00e-155 541.00
IUUC-Aml-002187 Ailuropoda melanoleuca 50.83 2.00e-98 352.00
IUUC-Atr-002899 Amborella trichopoda 54.88 0.00e+00 831.00
IUUC-Apl-003305 Anas platyrhynchos 51.86 3.00e-100 358.00
IUUC-Aca-004635 Anolis carolinensis 50.54 3.00e-90 325.00
IUUC-Ath-007606 Arabidopsis thaliana 98.21 0.00e+00 1532.00
IUUC-Bta-012527 Bos taurus 51.50 2.00e-101 362.00
IUUC-Bdi-014652 Brachypodium distachyon 59.60 0.00e+00 644.00
IUUC-Bol-016374 Brassica oleracea 89.62 0.00e+00 1437.00
IUUC-Bra-017068 Brassica rapa 87.85 0.00e+00 1382.00
IUUC-Cja-019706 Callithrix jacchus 51.50 5.00e-101 361.00
IUUC-Cfa-020139 Canis familiaris 43.98 1.00e-92 333.00
IUUC-Cpo-021710 Cavia porcellus 51.16 3.00e-101 362.00
IUUC-Cre-022746 Chlamydomonas reinhardtii 42.21 3.00e-79 289.00
IUUC-Csa-023546 Chlorocebus sabaeus 51.56 6.00e-98 351.00
IUUC-Dre-028215 Danio rerio 51.83 4.00e-101 361.00
IUUC-Dno-029314 Dasypus novemcinctus 51.83 5.00e-101 361.00
IUUC-Dor-030482 Dipodomys ordii 51.50 7.00e-102 363.00
IUUC-Eca-034143 Equus caballus 51.16 2.00e-98 352.00
IUUC-Fca-035924 Felis catus 51.83 1.00e-101 363.00
IUUC-Fal-037387 Ficedula albicollis 52.82 2.00e-103 369.00
IUUC-Gmo-038692 Gadus morhua 49.10 3.00e-103 368.00
IUUC-Gga-040597 Gallus gallus 51.83 2.00e-102 365.00
IUUC-Gac-042004 Gasterosteus aculeatus 52.16 5.00e-98 351.00
IUUC-Gma-044134 Glycine max 58.64 0.00e+00 868.00
IUUC-Ggo-044761 Gorilla gorilla 51.50 6.00e-101 360.00
IUUC-Hsa-045698 Homo sapiens 51.50 3.00e-101 362.00
IUUC-Hvu-047649 Hordeum vulgare 65.16 0.00e+00 634.00
IUUC-Itr-048697 Ictidomys tridecemlineatus 51.50 1.00e-101 363.00
IUUC-Lch-049674 Latimeria chalumnae 52.86 3.00e-105 375.00
IUUC-Lpe-051554 Leersia perrieri 61.99 0.00e+00 655.00
IUUC-Loc-052623 Lepisosteus oculatus 52.49 3.00e-100 358.00
IUUC-Laf-054587 Loxodonta africana 51.50 1.00e-101 363.00
IUUC-Mcc-055851 Macaca mulatta 51.50 6.00e-101 360.00
IUUC-Meu-056704 Macropus eugenii 52.49 2.00e-102 365.00
IUUC-Mpo-057381 Magnaporthe poae 34.38 1.00e-26 114.00
IUUC-Mtr-058053 Medicago truncatula 59.76 0.00e+00 887.00
IUUC-Mga-059608 Meleagris gallopavo 50.17 2.00e-99 356.00
IUUC-Mmr-061154 Microcebus murinus 51.50 4.00e-101 361.00
IUUC-Mdo-062365 Monodelphis domestica 52.16 2.00e-101 362.00
IUUC-Mmu-063754 Mus musculus 51.50 1.00e-101 363.00
IUUC-Mac-064439 Musa acuminata 46.62 0.00e+00 633.00
IUUC-Mpu-066245 Mustela putorius furo 52.16 6.00e-102 364.00
IUUC-Mlu-067692 Myotis lucifugus 51.68 3.00e-100 358.00
IUUC-Nle-070051 Nomascus leucogenys 51.16 6.00e-100 357.00
IUUC-Opr-070855 Ochotona princeps 51.50 2.00e-101 362.00
IUUC-Ont-071883 Oreochromis niloticus 51.50 5.00e-100 358.00
IUUC-Oan-073293 Ornithorhynchus anatinus 52.30 3.00e-98 351.00
IUUC-Ocu-074644 Oryctolagus cuniculus 51.50 1.00e-101 363.00
IUUC-Oba-075448 Oryza barthii 85.71 9.00e-169 586.00
IUUC-Obr-076385 Oryza brachyantha 59.39 0.00e+00 645.00
IUUC-Ogl-077427 Oryza glaberrima 60.82 0.00e+00 639.00
IUUC-Oin-079811 Oryza indica 59.31 0.00e+00 629.00
IUUC-Olo-080245 Oryza longistaminata 59.49 0.00e+00 632.00
IUUC-Ome-081239 Oryza meridionalis 79.15 6.00e-169 587.00
IUUC-Oni-082640 Oryza nivara 85.71 9.00e-169 586.00
IUUC-Opu-083748 Oryza punctata 83.02 2.00e-172 598.00
IUUC-Oru-084609 Oryza rufipogon 85.71 9.00e-169 586.00
IUUC-Osa-086267 Oryza sativa 53.24 8.00e-148 517.00
IUUC-Ola-087483 Oryzias latipes 48.33 1.00e-92 333.00
IUUC-Oga-087964 Otolemur garnettii 51.50 2.00e-101 362.00
IUUC-Oar-089483 Ovis aries 51.16 2.00e-99 355.00
IUUC-Ptr-091387 Pan troglodytes 51.50 2.00e-101 362.00
IUUC-Pan-092623 Papio anubis 51.50 6.00e-101 360.00
IUUC-Psi-093830 Pelodiscus sinensis 51.59 9.00e-97 347.00
IUUC-Ppa-095379 Physcomitrella patens 79.48 4.00e-151 528.00
IUUC-Pfo-096755 Poecilia formosa 52.49 1.00e-100 360.00
IUUC-Pab-097564 Pongo abelii 51.50 1.00e-100 360.00
IUUC-Pca-100357 Procavia capensis 55.83 2.00e-74 272.00
IUUC-Ppe-101237 Prunus persica 62.11 0.00e+00 970.00
IUUC-Pva-102397 Pteropus vampyrus 47.18 1.00e-88 320.00
IUUC-Rno-105349 Rattus norvegicus 51.50 1.00e-101 363.00
IUUC-Smo-109409 Selaginella moellendorffii 69.69 5.00e-156 544.00
IUUC-Sit-110360 Setaria italica 62.34 0.00e+00 647.00
IUUC-Sly-111307 Solanum lycopersicum 58.82 0.00e+00 889.00
IUUC-Stu-112053 Solanum tuberosum 54.75 0.00e+00 840.00
IUUC-Sar-112953 Sorex araneus 44.30 2.00e-56 212.00
IUUC-Ssc-115949 Sus scrofa 46.30 9.00e-48 184.00
IUUC-Tgu-117461 Taeniopygia guttata 52.82 4.00e-104 371.00
IUUC-Tru-117865 Takifugu rubripes 49.50 2.00e-93 335.00
IUUC-Tsy-119036 Tarsius syrichta 56.91 5.00e-39 154.00
IUUC-Tni-120903 Tetraodon nigroviridis 49.34 6.00e-92 331.00
IUUC-Tca-121185 Theobroma cacao 61.63 0.00e+00 1004.00
IUUC-Tae-125263 Triticum aestivum 62.62 0.00e+00 634.00
IUUC-Tur-126411 Triticum urartu 53.86 3.00e-149 522.00
IUUC-Ttr-128172 Tursiops truncatus 51.50 1.00e-101 363.00
IUUC-Xtr-132915 Xenopus tropicalis 50.16 1.00e-97 350.00
IUUC-Xma-134133 Xiphophorus maculatus 51.50 7.00e-98 350.00
Created Date 25-Jun-2017

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