iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-044134

UUCD1 version

UUC-GlM-01348

Ensembl Protein ID

GLYMA19G00890.2

UniProt Accession

K7MVR8; K7MVR8_SOYBN

Genbank Protein ID

KRG93160.1; KRG93161.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM000852; CM000852

Gene Name

LOC100788097; GLYMA_19G000400

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA19G00890	GLYMA19G00890.2	GLYMA19G00890.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-38	131.0	141	179
UBD/Beta-Prp	3.30e-60	205.4	14	256

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+t+k+WDl+ g+ll+
   Q: 141  GHTRGVNAIRFtPDgRWVVSGGEDNTVKLWDLTAGKLLH 179
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsl 100
           +h s ++c+k+  +++++l+tg++d+++ +w + +++++ slsgh++++ +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh ++ +s+
   Q: 14   AHASTVNCLKIgRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHSSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCTSV 107
           78889999***99*********************************************999999999*************************** PP
   S: 101  sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngke 194
           +f+p g++++sGs d  +++wd++++ c++ t +gh++ vn +++ pdg+ +vsG+ D+tv+lWdl  gkll++++  h++++++++f++n + 
   Q: 108  DFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPNEFL 199
           ******************************.********************************************98.**************** PP
   S: 195  lvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlr 252
           l++gs d+tvk+wdl+t e + +    t+ v+s+ fsp++  l++g  ++s++++  +
   Q: 200  LATGSADRTVKFWDLETFELIGSAGPETTGVRSLTFSPDGRTLLCGL-HESLKVFSWE 256
           *************************************9999999995.7777775444 PP

Organism

Glycine max

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTKRAYKLQ EFVAHASTVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLSGHSS 60
GIDSVSFDSS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH RSNCTSVDFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GATATTTTGA TTTTGAACCT TCCCACTCTC AATCAGTCAG GTTAATTTGA ACATAAGCAC 60
TATCATTACC GACTACCGAG GGGCAGAGTC ACACACACAG ATCGTGAAAG CGCCTCTCTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

gmx:100788097

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000873	Aegilops tauschii	40.87	3.00e-156	545.00
IUUC-Aml-002187	Ailuropoda melanoleuca	52.16	2.00e-101	363.00
IUUC-Apl-003305	Anas platyrhynchos	52.20	2.00e-101	363.00
IUUC-Aca-004635	Anolis carolinensis	50.85	5.00e-91	328.00
IUUC-Aly-005711	Arabidopsis lyrata	57.71	0.00e+00	868.00
IUUC-Ath-007323	Arabidopsis thaliana	56.97	0.00e+00	898.00
IUUC-Bta-012527	Bos taurus	52.82	4.00e-104	372.00
IUUC-Bdi-014552	Brachypodium distachyon	48.83	0.00e+00	673.00
IUUC-Bol-016374	Brassica oleracea	57.60	0.00e+00	877.00
IUUC-Bra-017390	Brassica rapa	55.75	0.00e+00	847.00
IUUC-Cja-019706	Callithrix jacchus	52.82	2.00e-103	370.00
IUUC-Cfa-020139	Canis familiaris	44.82	2.00e-96	346.00
IUUC-Cpo-021710	Cavia porcellus	53.16	8.00e-105	374.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	43.69	4.00e-83	302.00
IUUC-Csa-023546	Chlorocebus sabaeus	53.26	2.00e-100	360.00
IUUC-Cin-025156	Ciona intestinalis	46.31	2.00e-86	313.00
IUUC-Dre-028215	Danio rerio	52.49	7.00e-103	368.00
IUUC-Dno-029314	Dasypus novemcinctus	52.82	2.00e-103	370.00
IUUC-Dor-030482	Dipodomys ordii	52.82	2.00e-104	373.00
IUUC-Dme-032188	Drosophila melanogaster	35.90	1.00e-56	214.00
IUUC-Eca-034143	Equus caballus	52.49	4.00e-101	362.00
IUUC-Fal-037387	Ficedula albicollis	53.82	2.00e-105	376.00
IUUC-Gmo-038692	Gadus morhua	52.00	6.00e-103	368.00
IUUC-Gga-040597	Gallus gallus	48.93	4.00e-102	365.00
IUUC-Ggo-044761	Gorilla gorilla	52.82	1.00e-103	370.00
IUUC-Hsa-045698	Homo sapiens	52.82	6.00e-104	371.00
IUUC-Hvu-047781	Hordeum vulgare	45.94	0.00e+00	658.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	52.82	3.00e-104	372.00
IUUC-Lch-049674	Latimeria chalumnae	53.33	1.00e-106	380.00
IUUC-Lpe-051554	Leersia perrieri	73.42	0.00e+00	689.00
IUUC-Loc-052623	Lepisosteus oculatus	53.16	2.00e-100	360.00
IUUC-Laf-054587	Loxodonta africana	52.49	3.00e-103	369.00
IUUC-Mcc-055851	Macaca mulatta	52.82	1.00e-103	370.00
IUUC-Meu-056704	Macropus eugenii	32.94	1.00e-114	407.00
IUUC-Mtr-058053	Medicago truncatula	87.76	0.00e+00	1303.00
IUUC-Mmr-061154	Microcebus murinus	52.82	8.00e-104	371.00
IUUC-Mdo-062365	Monodelphis domestica	32.60	2.00e-110	393.00
IUUC-Mmu-063754	Mus musculus	52.82	3.00e-104	372.00
IUUC-Mac-065100	Musa acuminata	60.91	0.00e+00	877.00
IUUC-Mlu-067692	Myotis lucifugus	53.02	5.00e-103	368.00
IUUC-Nle-070051	Nomascus leucogenys	52.49	1.00e-102	367.00
IUUC-Opr-070855	Ochotona princeps	52.49	4.00e-103	369.00
IUUC-Ont-071883	Oreochromis niloticus	52.82	3.00e-101	362.00
IUUC-Oan-073293	Ornithorhynchus anatinus	53.82	2.00e-101	363.00
IUUC-Ocu-074644	Oryctolagus cuniculus	52.82	3.00e-104	372.00
IUUC-Oba-075448	Oryza barthii	52.24	0.00e+00	811.00
IUUC-Obr-076385	Oryza brachyantha	70.24	0.00e+00	690.00
IUUC-Ogl-077427	Oryza glaberrima	69.59	0.00e+00	692.00
IUUC-Ogu-078428	Oryza glumaepatula	47.26	3.00e-179	621.00
IUUC-Oin-079811	Oryza indica	67.81	0.00e+00	681.00
IUUC-Olo-080245	Oryza longistaminata	67.81	0.00e+00	681.00
IUUC-Ome-081239	Oryza meridionalis	65.41	0.00e+00	636.00
IUUC-Oni-082640	Oryza nivara	52.24	0.00e+00	811.00
IUUC-Opu-083748	Oryza punctata	71.08	0.00e+00	641.00
IUUC-Oru-084609	Oryza rufipogon	52.24	0.00e+00	811.00
IUUC-Osa-085988	Oryza sativa	61.40	2.00e-163	570.00
IUUC-Oga-087964	Otolemur garnettii	52.82	4.00e-104	372.00
IUUC-Oar-089483	Ovis aries	52.49	4.00e-102	365.00
IUUC-Ptr-091387	Pan troglodytes	52.82	6.00e-104	371.00
IUUC-Pan-092623	Papio anubis	52.82	1.00e-103	370.00
IUUC-Psi-093830	Pelodiscus sinensis	52.16	6.00e-98	351.00
IUUC-Ppa-095379	Physcomitrella patens	79.94	7.00e-154	537.00
IUUC-Pab-097564	Pongo abelii	52.82	2.00e-103	369.00
IUUC-Pop-099149	Populus trichocarpa	69.90	0.00e+00	1066.00
IUUC-Pca-100357	Procavia capensis	57.28	9.00e-77	281.00
IUUC-Ppe-101237	Prunus persica	72.60	0.00e+00	1113.00
IUUC-Pva-102397	Pteropus vampyrus	48.50	1.00e-91	330.00
IUUC-Rno-105349	Rattus norvegicus	52.82	3.00e-104	372.00
IUUC-Sly-111307	Solanum lycopersicum	65.17	0.00e+00	969.00
IUUC-Stu-112053	Solanum tuberosum	60.10	0.00e+00	908.00
IUUC-Sbi-114389	Sorghum bicolor	43.28	2.00e-170	593.00
IUUC-Tgu-117461	Taeniopygia guttata	53.16	5.00e-105	375.00
IUUC-Tru-117865	Takifugu rubripes	50.50	5.00e-95	342.00
IUUC-Tsy-119036	Tarsius syrichta	58.54	3.00e-40	159.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.05	8.00e-94	337.00
IUUC-Tca-121185	Theobroma cacao	65.85	0.00e+00	1066.00
IUUC-Tae-125263	Triticum aestivum	71.82	0.00e+00	676.00
IUUC-Tur-126411	Triticum urartu	60.32	2.00e-158	553.00
IUUC-Ttr-128172	Tursiops truncatus	52.82	3.00e-104	372.00
IUUC-Vvi-131489	Vitis vinifera	70.91	0.00e+00	1101.00
IUUC-Xtr-132915	Xenopus tropicalis	51.99	2.00e-99	356.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence