iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Obr-076385

Ensembl Protein ID

OB04G36630.1

UniProt Accession

J3M2N8; J3M2N8_ORYBR

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OB04G36630	OB04G36630.1	OB04G36630.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.30e-36	122.4	143	181
UBD/Beta-Prp	1.10e-57	196.2	16	278

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+++k+WDl+ g+ll+
   Q: 143  GHTRGVNAIRFtPDgRWVVSGGEDNVVKLWDLTAGKLLH 181
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfs 103
           +h+s ++c+k+  + +++l+tg++d+++ +w + +++ + slsgh+++v +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh ++ +s++f+
   Q: 16   AHSSNVNCLKIgRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGHTSAVESVNFDSTEVFVAGGAASGTIKLWDLEEAKIVRTLTGHRSNCMSVDFH 112
           79999999***999*******************************************9888888888****************************** PP
   S: 104  psgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsl 200
           p g++++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D++v+lWdl  gkll++++  h++++++++f++  + l++gs 
   Q: 113  PFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSA 207
           ***************************.********************************************98.********************** PP
   S: 201  dgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvav 272
           d+tvk+wdl+t e + +    t+ v+s+ f p++  l++g  ++s++++  +   +  t+    s+++   v
   Q: 208  DKTVKFWDLETFELIGSTGPETTGVRSMTFNPDGRSLLCG-LHESLKVFSWEPIRCHDTVDVGWSRLSDLNV 278
           *******************************999999999.5788888666666666666555555555544 PP

Organism

Oryza brachyantha

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTNTKRAYK LQEFVAHSSN VNCLKIGRKT SRVLVTGGED HKVNLWAIGK PNSILSLSGH 60
TSAVESVNFD STEVFVAGGA ASGTIKLWDL EEAKIVRTLT GHRSNCMSVD FHPFGEFFAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGGGTTGCG CCGGTGGCGC CGTGGCGGCG GCGGCGTGAT CTGGAGATGA GATTGGGGCC 60
CGAGGCGCGG TGTTTGGAGA CGACCTGCCT GCCATGACGA CCAACACCAA GCGCGCCTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

obr:102719379

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	68.67	0.00e+00	1238.00
IUUC-Aml-002187	Ailuropoda melanoleuca	53.18	2.00e-102	365.00
IUUC-Apl-003305	Anas platyrhynchos	51.53	2.00e-101	362.00
IUUC-Aca-004635	Anolis carolinensis	51.26	1.00e-91	329.00
IUUC-Aly-005711	Arabidopsis lyrata	65.09	0.00e+00	647.00
IUUC-Ath-007606	Arabidopsis thaliana	64.89	0.00e+00	645.00
IUUC-Acl-008307	Aspergillus clavatus	32.43	5.00e-30	124.00
IUUC-Bgr-011972	Blumeria graminis	31.60	7.00e-29	120.00
IUUC-Bta-012527	Bos taurus	53.85	2.00e-105	375.00
IUUC-Bdi-014652	Brachypodium distachyon	80.74	0.00e+00	1477.00
IUUC-Bol-016374	Brassica oleracea	71.26	1.00e-180	625.00
IUUC-Bra-017390	Brassica rapa	63.62	8.00e-178	616.00
IUUC-Cja-019706	Callithrix jacchus	53.85	8.00e-105	373.00
IUUC-Cfa-020139	Canis familiaris	45.92	5.00e-98	350.00
IUUC-Cpo-021710	Cavia porcellus	54.18	3.00e-106	378.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	44.66	3.00e-84	305.00
IUUC-Csa-023546	Chlorocebus sabaeus	53.63	2.00e-101	362.00
IUUC-Cin-025156	Ciona intestinalis	46.51	1.00e-88	319.00
IUUC-Csv-025962	Ciona savignyi	49.32	5.00e-89	319.00
IUUC-Dre-028215	Danio rerio	52.30	1.00e-103	370.00
IUUC-Dno-029314	Dasypus novemcinctus	54.18	5.00e-105	374.00
IUUC-Dor-030482	Dipodomys ordii	53.85	9.00e-106	376.00
IUUC-Dme-032188	Drosophila melanogaster	38.21	2.00e-57	216.00
IUUC-Eca-034143	Equus caballus	53.51	2.00e-102	365.00
IUUC-Fca-035924	Felis catus	54.18	1.00e-105	376.00
IUUC-Fal-037387	Ficedula albicollis	52.48	5.00e-105	374.00
IUUC-Gmo-038692	Gadus morhua	52.00	1.00e-102	366.00
IUUC-Gga-040597	Gallus gallus	52.84	1.00e-104	372.00
IUUC-Gac-042004	Gasterosteus aculeatus	49.39	4.00e-99	354.00
IUUC-Gma-044134	Glycine max	70.24	0.00e+00	667.00
IUUC-Ggo-044761	Gorilla gorilla	53.85	7.00e-105	373.00
IUUC-Hsa-045698	Homo sapiens	50.76	1.00e-105	376.00
IUUC-Hvu-047649	Hordeum vulgare	80.02	0.00e+00	1465.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	53.85	1.00e-105	375.00
IUUC-Lch-049674	Latimeria chalumnae	47.09	2.00e-108	385.00
IUUC-Lpe-051554	Leersia perrieri	90.62	0.00e+00	1716.00
IUUC-Loc-052623	Lepisosteus oculatus	53.38	3.00e-100	358.00
IUUC-Laf-054587	Loxodonta africana	53.85	2.00e-105	375.00
IUUC-Mcc-055851	Macaca mulatta	53.85	7.00e-105	373.00
IUUC-Meu-056704	Macropus eugenii	53.85	5.00e-105	374.00
IUUC-Mtr-058053	Medicago truncatula	74.95	0.00e+00	681.00
IUUC-Mga-059608	Meleagris gallopavo	51.35	1.00e-101	362.00
IUUC-Mmr-061154	Microcebus murinus	53.85	3.00e-105	374.00
IUUC-Mdo-062365	Monodelphis domestica	54.18	7.00e-105	374.00
IUUC-Mmu-063754	Mus musculus	53.40	6.00e-106	377.00
IUUC-Mac-064439	Musa acuminata	66.80	0.00e+00	674.00
IUUC-Mpu-066245	Mustela putorius furo	54.52	7.00e-106	377.00
IUUC-Mlu-067692	Myotis lucifugus	53.25	9.00e-105	373.00
IUUC-Nle-070051	Nomascus leucogenys	51.76	5.00e-104	370.00
IUUC-Opr-070855	Ochotona princeps	53.51	4.00e-105	374.00
IUUC-Ont-071883	Oreochromis niloticus	50.83	5.00e-99	354.00
IUUC-Oan-073293	Ornithorhynchus anatinus	54.09	3.00e-101	362.00
IUUC-Ocu-074644	Oryctolagus cuniculus	53.85	1.00e-105	376.00
IUUC-Oba-075448	Oryza barthii	78.12	0.00e+00	1414.00
IUUC-Ogl-077427	Oryza glaberrima	94.56	0.00e+00	1733.00
IUUC-Ogu-078428	Oryza glumaepatula	75.87	0.00e+00	1204.00
IUUC-Oin-079811	Oryza indica	93.16	0.00e+00	1720.00
IUUC-Olo-080245	Oryza longistaminata	90.11	0.00e+00	1655.00
IUUC-Ome-081239	Oryza meridionalis	90.52	0.00e+00	1597.00
IUUC-Oni-082640	Oryza nivara	78.12	0.00e+00	1414.00
IUUC-Opu-083748	Oryza punctata	81.88	0.00e+00	1498.00
IUUC-Oru-084609	Oryza rufipogon	78.12	0.00e+00	1414.00
IUUC-Osa-085988	Oryza sativa	89.34	0.00e+00	1604.00
IUUC-Ola-087483	Oryzias latipes	49.33	1.00e-94	339.00
IUUC-Oga-087964	Otolemur garnettii	53.85	2.00e-105	375.00
IUUC-Oar-089483	Ovis aries	53.51	2.00e-103	369.00
IUUC-Ptr-091387	Pan troglodytes	50.76	1.00e-105	376.00
IUUC-Pan-092623	Papio anubis	53.85	7.00e-105	373.00
IUUC-Psi-093830	Pelodiscus sinensis	53.74	7.00e-100	357.00
IUUC-Ppa-095379	Physcomitrella patens	71.66	3.00e-158	551.00
IUUC-Pfo-096755	Poecilia formosa	46.43	1.00e-99	356.00
IUUC-Pab-097564	Pongo abelii	53.85	2.00e-104	372.00
IUUC-Pop-099149	Populus trichocarpa	73.33	0.00e+00	689.00
IUUC-Pca-100357	Procavia capensis	57.35	1.00e-76	280.00
IUUC-Ppe-101237	Prunus persica	76.52	0.00e+00	716.00
IUUC-Pva-102397	Pteropus vampyrus	49.50	1.00e-92	332.00
IUUC-Rno-105349	Rattus norvegicus	53.40	4.00e-106	377.00
IUUC-Smo-109409	Selaginella moellendorffii	68.67	2.00e-161	561.00
IUUC-Sit-110360	Setaria italica	82.11	0.00e+00	1505.00
IUUC-Sly-111307	Solanum lycopersicum	72.85	0.00e+00	676.00
IUUC-Stu-112462	Solanum tuberosum	71.02	0.00e+00	650.00
IUUC-Sar-112953	Sorex araneus	46.05	4.00e-58	218.00
IUUC-Ssc-115949	Sus scrofa	48.15	2.00e-49	189.00
IUUC-Tgu-117461	Taeniopygia guttata	52.48	1.00e-105	376.00
IUUC-Tru-117865	Takifugu rubripes	49.67	5.00e-93	334.00
IUUC-Tsy-119036	Tarsius syrichta	59.50	8.00e-41	160.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.50	2.00e-91	329.00
IUUC-Tca-121185	Theobroma cacao	55.04	0.00e+00	938.00
IUUC-Tae-125307	Triticum aestivum	80.87	0.00e+00	1476.00
IUUC-Tur-126411	Triticum urartu	69.71	0.00e+00	1217.00
IUUC-Ttr-128172	Tursiops truncatus	53.85	1.00e-105	376.00
IUUC-Vvi-131489	Vitis vinifera	75.82	0.00e+00	707.00
IUUC-Xtr-132915	Xenopus tropicalis	52.65	9.00e-101	360.00
IUUC-Xma-134133	Xiphophorus maculatus	50.66	6.00e-97	347.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence