iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl+d+   ++  +vlp C+H fh dC+ +w       + + +CPlCr
   Q: 120  CAVCLSDLvdgDK-ARVLPrCNHGFHVDCIDMW------FQSHSTCPLCR 162
           ********77433.888888*************......9999******8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDEESVSNGS LFSKFEGEET MGKVLLFSIV SIFTGILFLL LLHLYARLFW WRVEQHFNLN 60
LIQSDDPGST VIGRNPRRRR FVFAQSQEDP LHNAGLDSKI LQSIHVVVFK CTDFKDGLEC 120

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Nucleotide Sequence
(Fasta)

ATGGACGAAG AATCTGTTTC TAATGGTTCT CTTTTCAGCA AATTCGAAGG AGAAGAGACG 60
ATGGGAAAAG TTCTTCTATT CTCAATCGTA TCGATTTTCA CAGGGATTCT ATTCCTCCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT1G53820

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000503	Aegilops tauschii	48.86	9.00e-20	89.70
IUUC-Aly-005421	Arabidopsis lyrata	86.15	7.00e-152	528.00
IUUC-Bol-015888	Brassica oleracea	73.41	5.00e-95	340.00
IUUC-Bra-016720	Brassica rapa	69.90	6.00e-97	346.00
IUUC-Gma-043714	Glycine max	40.28	2.00e-41	161.00
IUUC-Lpe-051092	Leersia perrieri	40.00	6.00e-20	90.90
IUUC-Mtr-058409	Medicago truncatula	48.88	7.00e-44	170.00
IUUC-Mac-065123	Musa acuminata	38.14	2.00e-34	139.00
IUUC-Oba-074984	Oryza barthii	45.30	5.00e-24	104.00
IUUC-Ogl-077250	Oryza glaberrima	45.30	6.00e-24	103.00
IUUC-Ogu-078929	Oryza glumaepatula	45.30	5.00e-24	104.00
IUUC-Oin-079559	Oryza indica	45.30	5.00e-24	104.00
IUUC-Ome-081596	Oryza meridionalis	44.55	4.00e-21	94.40
IUUC-Oni-082758	Oryza nivara	46.15	8.00e-25	107.00
IUUC-Opu-083878	Oryza punctata	47.01	2.00e-23	102.00
IUUC-Oru-084427	Oryza rufipogon	45.30	5.00e-24	104.00
IUUC-Osa-086236	Oryza sativa	45.30	6.00e-24	103.00
IUUC-Pop-099297	Populus trichocarpa	50.00	3.00e-40	157.00
IUUC-Sit-109688	Setaria italica	37.76	8.00e-14	70.10
IUUC-Sly-110862	Solanum lycopersicum	41.71	6.00e-35	140.00
IUUC-Stu-112429	Solanum tuberosum	42.72	3.00e-36	144.00
IUUC-Sbi-114427	Sorghum bicolor	39.39	1.00e-29	123.00
IUUC-Tca-121232	Theobroma cacao	44.73	1.00e-47	182.00
IUUC-Tae-125140	Triticum aestivum	40.24	6.00e-29	121.00
IUUC-Tur-126264	Triticum urartu	30.58	2.00e-23	102.00
IUUC-Vvi-131354	Vitis vinifera	45.31	3.00e-45	174.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence