iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

mRNA Expression
GEO	FFGED
Protein-protein Interaction
IID	iRefIndex	HINT	Mentha
Post-translational Modifications (PTMs)
CPLM	dbPAF	dbPTM	UniProt
PHOSIDA	BioGRID
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
ULD/UDP/UFD/UBX	UBX	15258615

Classification

Family	E-value	Score	Start	End
ULD/UDP/UFD/UBX	9.70e-20	69.4	214	290

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/UBX

   S: 3    teqatlqiRlpdGkrlvrkFpssttleqiyqfveyllvessdpFeLvspfPrrtlkpeehmstlqeagLvpsgsllv 79
           ++++ lqiR++dGk+l+++F+ss+tl++++++v+ ++++ + p+++++++Pr t+k++++ +tl+ ++L+p++ ll+
   Q: 214  SSKCVLQIRMTDGKTLKHEFNSSETLNDVRKWVDVNRTDGDCPYSFHRGIPRVTFKDSDELKTLETLELTPRSALLL 290
           569**********************************************************************9986 PP

Organism

Saccharomyces cerevisiae

Functional Description
(View)

Involved in CDC48-dependent protein degradation through the ubiquitin/proteasome pathway.

Protein Sequence
(Fasta)

MLEALFRDSV EEAINDSIKE GVVLAVYNTA RDDQWLKSWF KGDDVSLDTL AEHSIWLRLV 60
KDTEQFQLFE QVFPNVVVPS IYLIRAGKIE LIIQGEDDRH WEKLLACIGI KDKKAGESSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTTAGAAG CACTGTTTAG AGATTCTGTG GAAGAAGCAA TAAACGATTC CATCAAGGAA 60
GGCGTTGTGC TGGCCGTTTA CAACACTGCA CGGGATGACC AGTGGCTGAA AAGTTGGTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0256--Endoplasmic reticulum
KW-1017--Isopeptide bond
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway

Interpro

IPR029071--Ubiquitin-rel_dom
IPR001012--UBX_dom

PROSITE

PS50033--UBX

Pfam

PF00789--UBX

SMART

SM00166--UBX

Gene Ontology

GO:0005783--C:endoplasmic reticulum
GO:0005635--C:nuclear envelope
GO:0030435--P:sporulation resulting in formation of a cellular spore
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

sce:YBR273C

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002867	Amborella trichopoda	40.54	1.00e-10	58.90
IUUC-Ath-007102	Arabidopsis thaliana	35.14	3.00e-07	47.80
IUUC-Ago-007989	Ashbya gossypii	40.18	1.00e-18	85.10
IUUC-Acl-008134	Aspergillus clavatus	24.47	6.00e-08	50.10
IUUC-Afl-008453	Aspergillus flavus	31.58	2.00e-08	51.60
IUUC-Ani-009313	Aspergillus nidulans	24.73	1.00e-06	45.40
IUUC-Ang-009823	Aspergillus niger	29.79	4.00e-07	47.40
IUUC-Ate-010522	Aspergillus terreus	29.67	2.00e-06	45.10
IUUC-Bgr-012034	Blumeria graminis	29.53	3.00e-09	54.30
IUUC-Bci-013988	Botrytis cinerea	31.71	3.00e-14	70.90
IUUC-Cel-018300	Caenorhabditis elegans	34.21	7.00e-10	55.80
IUUC-Cho-024543	Choloepus hoffmanni	31.94	1.00e-07	47.80
IUUC-Dse-031401	Dothistroma septosporum	25.60	2.00e-07	48.50
IUUC-Dme-032055	Drosophila melanogaster	27.11	2.00e-09	54.30
IUUC-Ete-032960	Echinops telfairi	27.67	8.00e-07	45.40
IUUC-Fox-037707	Fusarium oxysporum	34.25	3.00e-15	73.90
IUUC-Fso-038439	Fusarium solani	35.42	3.00e-16	77.40
IUUC-Ggr-039876	Gaeumannomyces graminis	35.23	4.00e-08	50.80
IUUC-Gac-041907	Gasterosteus aculeatus	30.85	3.00e-05	41.20
IUUC-Kpa-049346	Komagataella pastoris	30.23	9.00e-23	99.40
IUUC-Lch-049508	Latimeria chalumnae	39.73	6.00e-12	62.80
IUUC-Loc-051763	Lepisosteus oculatus	28.00	8.00e-05	40.80
IUUC-Meu-056581	Macropus eugenii	35.19	1.10e-02	32.70
IUUC-Mor-057066	Magnaporthe oryzae	47.17	3.00e-07	47.80
IUUC-Mpo-057604	Magnaporthe poae	36.36	6.00e-09	53.50
IUUC-Mla-059024	Melampsora laricipopulina	39.53	1.10e-01	30.00
IUUC-Mvi-060245	Microbotryum violaceum	37.50	3.00e-07	47.00
IUUC-Mdo-062299	Monodelphis domestica	31.65	5.00e-09	52.80
IUUC-Nfi-068466	Neosartorya fischeri	31.43	6.00e-07	46.60
IUUC-Ncr-068793	Neurospora crassa	27.16	6.00e-09	53.50
IUUC-Nle-069046	Nomascus leucogenys	26.60	4.00e-04	37.70
IUUC-Oan-073244	Ornithorhynchus anatinus	31.08	4.00e-07	46.60
IUUC-Pma-094221	Petromyzon marinus	37.33	3.00e-10	55.10
IUUC-Ppa-095357	Physcomitrella patens	41.67	1.00e-12	65.90
IUUC-Pfo-097131	Poecilia formosa	28.72	5.00e-05	40.40
IUUC-Pop-099727	Populus trichocarpa	39.19	3.00e-07	48.10
IUUC-Ppe-101615	Prunus persica	28.45	1.00e-07	49.70
IUUC-Sha-107526	Sarcophilus harrisii	31.65	4.00e-09	53.10
IUUC-Sja-107741	Schizosaccharomyces japonicus	33.02	1.00e-09	54.70
IUUC-Ssl-108389	Sclerotinia sclerotiorum	32.78	1.00e-15	75.50
IUUC-Smo-109482	Selaginella moellendorffii	40.26	2.00e-11	62.40
IUUC-Sly-111129	Solanum lycopersicum	34.94	9.00e-07	45.80
IUUC-Sar-112945	Sorex araneus	31.94	8.00e-08	48.50
IUUC-Tca-121557	Theobroma cacao	38.16	2.00e-05	42.00
IUUC-Tre-122127	Trichoderma reesei	30.97	6.00e-11	60.10
IUUC-Tvi-122638	Trichoderma virens	28.31	1.00e-18	85.90
IUUC-Tme-127065	Tuber melanosporum	36.62	8.00e-15	72.40
IUUC-Vda-129816	Verticillium dahliae	32.62	9.00e-14	69.30
IUUC-Vpa-130179	Vicugna pacos	33.93	1.00e-05	41.20
IUUC-Vvi-131692	Vitis vinifera	36.49	2.00e-04	38.50
IUUC-Xma-134134	Xiphophorus maculatus	27.07	5.00e-05	40.40
IUUC-Yli-134465	Yarrowia lipolytica	34.67	4.00e-05	39.30

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence