iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sja-107970

Ensembl Protein ID

EEB08480

UniProt Accession

B6K4S3; B6K4S3_SCHJY

Genbank Protein ID

EEB08480.1

Protein Name

Lid2 complex subunit

Genbank Nucleotide ID

KE651167

Gene Name

SJAG_03635

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SJAG_03635	EEB08480	EEB08480

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	2.60e-21	73.6	1061	1106

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           +C +C+ ++++   ++eCe Crew+H++Clk+s +++++ +ek++Cp C+
   Q: 1061 FC-FCRLPENGV--MIECEVCREWYHAKCLKIS-KKKMRPDEKFTCPICD 1106
           79.999999987..*******************.777666667******7 PP

Organism

Schizosaccharomyces japonicus

Protein Sequence
(Fasta)

MKPGKPKRKT NTADLLRIDA LKLNCTDEES QQIPEKRPFG LKHVPCIKLS EKELADPFKV 60
ITSHWADICK YGAIKVVPPS NWRIPVTLDA DEFRFRAKRE FVQSENFNLS ENAQYYQSLK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCGGATTTT GTATGGCACT CGAAAATGAA AGTGGTAACG TGGGCCTAGT GGTGGTTTGT 60
CAACAAAAAG CCTCACTCAC AAGCGAAGGA AATAAGGTTA AATGAAAAAC ACTACGCGAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001606--ARID_dom
IPR003347--JmjC_dom
IPR003349--JmjN
IPR013637--Lys_sp_deMease-like_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51011--ARID
PS51184--JMJC
PS51183--JMJN
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01388--ARID
PF02373--JmjC
PF00628--PHD
PF08429--PLU-1

SMART

SM00558--JmjC
SM00249--PHD

Gene Ontology

GO:0048189--C:Lid2 complex
GO:0031934--C:mating-type region heterochromatin
GO:0031618--C:nuclear pericentric heterochromatin
GO:0003677--F:DNA binding
GO:0034647--F:histone demethylase activity (H3-trimethyl-K4 specific)
GO:0016706--F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0008270--F:zinc ion binding
GO:0030702--P:chromatin silencing at centromere
GO:0030466--P:chromatin silencing at silent mating-type cassette
GO:0031507--P:heterochromatin assembly
GO:0051567--P:histone H3-K9 methylation
GO:0000070--P:mitotic sister chromatid segregation
GO:0051572--P:negative regulation of histone H3-K4 methylation
GO:0034630--P:RITS complex localization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002595	Amborella trichopoda	23.40	3.00e-23	103.00
IUUC-Aca-004712	Anolis carolinensis	21.38	2.00e-38	152.00
IUUC-Aly-006097	Arabidopsis lyrata	35.96	9.00e-11	62.00
IUUC-Ath-007218	Arabidopsis thaliana	34.83	2.00e-10	60.50
IUUC-Acl-008162	Aspergillus clavatus	29.91	7.00e-152	530.00
IUUC-Afl-008625	Aspergillus flavus	31.50	4.00e-154	537.00
IUUC-Afu-008796	Aspergillus fumigatus	30.40	3.00e-152	531.00
IUUC-Ani-009139	Aspergillus nidulans	30.49	5.00e-150	523.00
IUUC-Aor-010155	Aspergillus oryzae	31.50	4.00e-154	537.00
IUUC-Ate-010453	Aspergillus terreus	29.91	3.00e-146	511.00
IUUC-Ame-011323	Astyanax mexicanus	21.86	1.00e-46	181.00
IUUC-Bgr-012241	Blumeria graminis	30.08	5.00e-143	500.00
IUUC-Bta-013099	Bos taurus	22.00	5.00e-21	95.50
IUUC-Bci-013992	Botrytis cinerea	29.92	4.00e-143	501.00
IUUC-Bdi-014050	Brachypodium distachyon	21.83	1.00e-20	94.70
IUUC-Bol-016145	Brassica oleracea	43.64	6.00e-14	70.10
IUUC-Bra-018006	Brassica rapa	46.00	2.00e-13	68.20
IUUC-Cpo-022340	Cavia porcellus	19.72	2.00e-31	130.00
IUUC-Cre-022637	Chlamydomonas reinhardtii	55.56	8.00e-07	42.40
IUUC-Csa-023946	Chlorocebus sabaeus	21.01	2.00e-21	96.70
IUUC-Cho-024280	Choloepus hoffmanni	22.78	7.00e-28	118.00
IUUC-Cgl-026613	Colletotrichum gloeosporioides	30.24	2.00e-142	499.00
IUUC-Cne-026851	Cryptococcus neoformans	21.95	2.00e-64	239.00
IUUC-Dre-027909	Danio rerio	20.88	2.00e-25	109.00
IUUC-Dor-030226	Dipodomys ordii	20.20	2.00e-19	90.10
IUUC-Dse-031479	Dothistroma septosporum	29.88	4.00e-147	514.00
IUUC-Dme-032021	Drosophila melanogaster	21.97	4.00e-29	122.00
IUUC-Ete-033052	Echinops telfairi	50.00	4.00e-12	65.90
IUUC-Eca-033834	Equus caballus	20.85	1.00e-21	97.10
IUUC-Eeu-034692	Erinaceus europaeus	21.01	3.00e-22	99.40
IUUC-Fal-037078	Ficedula albicollis	21.21	4.00e-31	128.00
IUUC-Fso-038127	Fusarium solani	30.21	2.00e-142	499.00
IUUC-Gmo-039522	Gadus morhua	20.43	2.00e-28	119.00
IUUC-Ggr-039929	Gaeumannomyces graminis	29.82	5.00e-143	500.00
IUUC-Gac-041461	Gasterosteus aculeatus	21.65	6.00e-41	161.00
IUUC-Gma-044327	Glycine max	21.45	1.00e-21	97.40
IUUC-Hvu-047583	Hordeum vulgare	51.11	3.00e-12	65.50
IUUC-Itr-048348	Ictidomys tridecemlineatus	20.61	6.00e-29	121.00
IUUC-Loc-051963	Lepisosteus oculatus	23.16	5.00e-27	115.00
IUUC-Laf-053761	Loxodonta africana	20.04	7.00e-34	137.00
IUUC-Meu-056643	Macropus eugenii	20.97	1.00e-24	107.00
IUUC-Mor-057198	Magnaporthe oryzae	31.01	4.00e-150	524.00
IUUC-Mpo-057317	Magnaporthe poae	30.39	7.00e-144	503.00
IUUC-Mga-059358	Meleagris gallopavo	20.85	5.00e-33	135.00
IUUC-Mvi-060436	Microbotryum violaceum	44.23	2.00e-10	58.50
IUUC-Mmu-064016	Mus musculus	23.13	2.00e-34	139.00
IUUC-Mac-065069	Musa acuminata	69.57	1.00e-06	48.10
IUUC-Mlu-067363	Myotis lucifugus	21.64	2.00e-42	166.00
IUUC-Nfi-068430	Neosartorya fischeri	30.22	1.00e-151	529.00
IUUC-Ncr-068763	Neurospora crassa	30.05	5.00e-148	517.00
IUUC-Opr-071002	Ochotona princeps	22.41	5.00e-18	85.50
IUUC-Ont-071701	Oreochromis niloticus	20.74	4.00e-42	165.00
IUUC-Obr-076296	Oryza brachyantha	21.82	4.00e-16	80.10
IUUC-Ogl-077886	Oryza glaberrima	51.11	3.00e-12	65.50
IUUC-Oin-079273	Oryza indica	46.67	2.00e-11	60.10
IUUC-Olo-080668	Oryza longistaminata	51.11	5.00e-12	65.90
IUUC-Osa-085487	Oryza sativa	51.11	3.00e-12	65.50
IUUC-Oar-090027	Ovis aries	22.00	5.00e-21	95.50
IUUC-Pan-092094	Papio anubis	21.65	2.00e-42	167.00
IUUC-Pma-094137	Petromyzon marinus	21.27	6.00e-33	134.00
IUUC-Pno-094879	Phaeosphaeria nodorum	31.29	1.00e-153	535.00
IUUC-Ppa-095646	Physcomitrella patens	44.26	3.00e-13	70.10
IUUC-Pop-099061	Populus trichocarpa	44.83	4.00e-06	43.50
IUUC-Pva-103035	Pteropus vampyrus	20.70	4.00e-33	135.00
IUUC-Pgr-103434	Puccinia graminis	30.23	3.00e-13	67.80
IUUC-Pte-104195	Pyrenophora teres	30.41	7.00e-150	523.00
IUUC-Pyt-104566	Pyrenophora triticirepentis	30.70	9.00e-151	526.00
IUUC-Sce-106207	Saccharomyces cerevisiae	23.12	2.00e-19	89.00
IUUC-Sha-107506	Sarcophilus harrisii	21.83	3.00e-40	159.00
IUUC-Spo-108283	Schizosaccharomyces pombe	43.50	0.00e+00	1239.00
IUUC-Ssl-108489	Sclerotinia sclerotiorum	30.38	1.00e-149	522.00
IUUC-Smo-108843	Selaginella moellendorffii	48.94	8.00e-10	57.40
IUUC-Stu-112523	Solanum tuberosum	42.00	3.00e-09	53.90
IUUC-Sbi-114173	Sorghum bicolor	48.84	1.00e-10	58.90
IUUC-Tgu-116613	Taeniopygia guttata	21.58	6.00e-32	131.00
IUUC-Tru-118604	Takifugu rubripes	22.41	2.00e-45	176.00
IUUC-Tni-120779	Tetraodon nigroviridis	21.60	7.00e-43	167.00
IUUC-Tre-122213	Trichoderma reesei	30.89	4.00e-140	491.00
IUUC-Tvi-122263	Trichoderma virens	30.15	8.00e-132	463.00
IUUC-Tme-127087	Tuber melanosporum	31.58	3.00e-163	567.00
IUUC-Tbe-128040	Tupaia belangeri	22.00	4.00e-21	95.50
IUUC-Vda-129733	Verticillium dahliae	29.08	4.00e-133	467.00
IUUC-Vpa-130433	Vicugna pacos	22.00	3.00e-21	95.50
IUUC-Vvi-130929	Vitis vinifera	34.38	1.00e-13	71.60
IUUC-Xtr-131762	Xenopus tropicalis	24.21	1.00e-35	143.00
IUUC-Xma-133598	Xiphophorus maculatus	21.70	5.00e-43	168.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence