iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ptr-091359

Ensembl Protein ID

ENSPTRP00000025858.2

UniProt Accession

H2QMQ3; H2QMQ3_PANTR

Genbank Protein ID

JAA04640.1; JAA16412.1; JAA29786.1; JAA37483.1

Protein Name

Ribosomal RNA processing 9, small subunit (SSU) processome component, homolog

Genbank Nucleotide ID

AACZ03025734; GABF01005733; GABD01003314; GABE01007256

Gene Name

RRP9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPTRG00000014980.2	ENSPTRT00000028033.2	ENSPTRP00000025858.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.50e-29	99.3	322	356
UBD/Beta-Prp	1.40e-41	142.6	145	406

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgv 34
           gH++s+ c+++ ++ ++vsG+dDg++ +W l++ +
   Q: 322  GHQGSIDCIHLiNEEHMVSGADDGSVALWGLSKKR 356
           8*********9999***************987665 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkl...........lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkc 86
           h+  itc+ ++pd+s ++++ +d t++ w+v++g +             +  gh++ v ++ +s+dgk+l++g + ++i +w+ ++++ 
   Q: 145  HQLSITCLVITPDDSAIFSAAKDCTVIKWSVESGRKlhviprakkgaEGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQH 233
           66689999999**********************999888888888877777888888******************************** PP
   S: 87   vhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl 175
           ++t++gh d v  l+f + ++ l s+shdr ++vw++ +++ +e tl gh+++v  +   + ++++ +G+ D+tvr+W+++ ++ l   
   Q: 234  LYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE-TLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFY 321
           ******************99*********************999.****************99*****************988888655 PP
   S: 176  tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght...........dnvksvrfspnderlvsgssDgsiriWdlr 252
            g h++s+ ++ +  + +++vsg++dg+v lw l++++ +  +++              +++sv+++ n++++++gs+   +r+W + 
   Q: 322  -G-HQGSIDCIHLINE-EHMVSGADDGSVALWGLSKKRPLALQREAHglrgepgleqpFWISSVAALLNTDLVATGSHSSCVRLWQCG 406
           .6.9*******98876.79****************999977776655577999999999999999999999**************875 PP

Organism

Pan troglodytes

Protein Sequence
(Fasta)

MSATAAARKR GKPASGAGAG AGAGKRRRKA DSAGDRGKSK GGGKMNEEIS SDSESESLAP 60
RKPEEEEEEE LEETAQEKKL RLAKLYLEQL RQQEEEKAEA RAFEEDQVAG RLKEDVLEQR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAGGGTTCA GCTGCCACGT GAGTTCTGCG GCCGCTGCTA CACGCCTGGT GGGCAGCATG 60
TCGGCAACAG CGGCTGCTCG TAAGCGGGGA AAGCCGGCCT CTGGGGCCGG GGCTGGCGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0031428--C:box C/D snoRNP complex
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0034511--F:U3 snoRNA binding
GO:0006364--P:rRNA processing

KEGG

ptr:460407

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000586	Aegilops tauschii	33.25	9.00e-55	207.00
IUUC-Aml-002072	Ailuropoda melanoleuca	93.89	0.00e+00	763.00
IUUC-Atr-002824	Amborella trichopoda	37.18	3.00e-70	259.00
IUUC-Apl-003264	Anas platyrhynchos	74.40	1.00e-165	575.00
IUUC-Aca-004898	Anolis carolinensis	78.17	3.00e-180	624.00
IUUC-Aly-005535	Arabidopsis lyrata	38.77	3.00e-67	249.00
IUUC-Ath-007119	Arabidopsis thaliana	36.63	8.00e-72	264.00
IUUC-Ago-007710	Ashbya gossypii	28.74	2.00e-56	213.00
IUUC-Acl-008345	Aspergillus clavatus	34.52	4.00e-56	212.00
IUUC-Afl-008718	Aspergillus flavus	32.12	7.00e-54	205.00
IUUC-Afu-008966	Aspergillus fumigatus	30.43	1.00e-53	204.00
IUUC-Ani-009214	Aspergillus nidulans	31.94	5.00e-57	215.00
IUUC-Ang-009774	Aspergillus niger	34.01	1.00e-57	218.00
IUUC-Aor-009956	Aspergillus oryzae	32.12	7.00e-54	205.00
IUUC-Ate-010449	Aspergillus terreus	30.08	8.00e-55	208.00
IUUC-Ame-011860	Astyanax mexicanus	71.50	8.00e-169	586.00
IUUC-Bgr-012213	Blumeria graminis	30.67	1.00e-61	230.00
IUUC-Bta-012698	Bos taurus	94.60	0.00e+00	724.00
IUUC-Bci-013973	Botrytis cinerea	28.51	2.00e-59	223.00
IUUC-Bdi-014790	Brachypodium distachyon	36.39	2.00e-62	233.00
IUUC-Bol-016068	Brassica oleracea	38.10	2.00e-66	246.00
IUUC-Bra-017410	Brassica rapa	39.15	3.00e-62	232.00
IUUC-Cel-018616	Caenorhabditis elegans	36.48	6.00e-73	268.00
IUUC-Cja-019532	Callithrix jacchus	95.16	0.00e+00	766.00
IUUC-Cfa-020961	Canis familiaris	89.53	0.00e+00	748.00
IUUC-Cpo-021527	Cavia porcellus	92.02	0.00e+00	743.00
IUUC-Csa-023106	Chlorocebus sabaeus	98.64	0.00e+00	793.00
IUUC-Cin-025670	Ciona intestinalis	51.92	6.00e-123	434.00
IUUC-Csv-026172	Ciona savignyi	51.66	7.00e-117	413.00
IUUC-Cgl-026619	Colletotrichum gloeosporioides	33.12	2.00e-63	236.00
IUUC-Cne-027070	Cryptococcus neoformans	29.70	2.00e-47	183.00
IUUC-Cme-027125	Cyanidioschyzon merolae	26.67	9.00e-35	141.00
IUUC-Dre-027919	Danio rerio	68.22	2.00e-160	558.00
IUUC-Dno-029684	Dasypus novemcinctus	94.37	3.00e-169	587.00
IUUC-Dor-030363	Dipodomys ordii	87.19	6.00e-106	377.00
IUUC-Dse-031503	Dothistroma septosporum	31.80	3.00e-60	226.00
IUUC-Dme-031979	Drosophila melanogaster	45.32	6.00e-100	357.00
IUUC-Eca-033735	Equus caballus	95.25	0.00e+00	730.00
IUUC-Fca-036193	Felis catus	94.16	0.00e+00	746.00
IUUC-Fal-037058	Ficedula albicollis	71.08	7.00e-170	590.00
IUUC-Fox-038036	Fusarium oxysporum	32.48	2.00e-64	239.00
IUUC-Fso-038298	Fusarium solani	32.97	4.00e-63	235.00
IUUC-Gmo-038796	Gadus morhua	64.74	4.00e-141	494.00
IUUC-Ggr-040074	Gaeumannomyces graminis	30.75	1.00e-53	204.00
IUUC-Gga-040743	Gallus gallus	77.03	5.00e-137	479.00
IUUC-Gac-042583	Gasterosteus aculeatus	64.30	3.00e-165	574.00
IUUC-Gma-042659	Glycine max	39.29	3.00e-80	292.00
IUUC-Ggo-045543	Gorilla gorilla	98.95	0.00e+00	806.00
IUUC-Hsa-047017	Homo sapiens	99.32	0.00e+00	800.00
IUUC-Hvu-047173	Hordeum vulgare	37.43	4.00e-68	251.00
IUUC-Itr-048062	Ictidomys tridecemlineatus	88.84	0.00e+00	742.00
IUUC-Kpa-049262	Komagataella pastoris	31.28	4.00e-58	219.00
IUUC-Lch-050566	Latimeria chalumnae	73.12	3.00e-155	541.00
IUUC-Lpe-051651	Leersia perrieri	34.91	2.00e-64	239.00
IUUC-Loc-051997	Lepisosteus oculatus	71.19	2.00e-164	572.00
IUUC-Lma-053182	Leptosphaeria maculans	30.10	3.00e-60	226.00
IUUC-Laf-054105	Loxodonta africana	93.80	0.00e+00	729.00
IUUC-Mcc-055215	Macaca mulatta	98.64	0.00e+00	795.00
IUUC-Meu-055943	Macropus eugenii	82.25	0.00e+00	669.00
IUUC-Mor-057069	Magnaporthe oryzae	32.61	1.00e-63	237.00
IUUC-Mpo-057358	Magnaporthe poae	31.16	5.00e-51	195.00
IUUC-Mtr-058209	Medicago truncatula	38.60	1.00e-78	287.00
IUUC-Mla-059043	Melampsora laricipopulina	27.84	5.00e-49	189.00
IUUC-Mga-060024	Meleagris gallopavo	75.38	3.00e-154	537.00
IUUC-Mvi-060371	Microbotryum violaceum	31.63	2.00e-66	246.00
IUUC-Mmr-061403	Microcebus murinus	95.11	0.00e+00	748.00
IUUC-Mdo-063026	Monodelphis domestica	84.05	0.00e+00	671.00
IUUC-Mmu-063646	Mus musculus	94.83	0.00e+00	769.00
IUUC-Mac-064801	Musa acuminata	37.00	4.00e-75	275.00
IUUC-Mpu-065760	Mustela putorius furo	91.79	0.00e+00	766.00
IUUC-Mlu-067963	Myotis lucifugus	94.50	0.00e+00	744.00
IUUC-Nfi-068288	Neosartorya fischeri	32.21	4.00e-57	216.00
IUUC-Ncr-068679	Neurospora crassa	32.52	4.00e-56	212.00
IUUC-Nle-069766	Nomascus leucogenys	89.71	0.00e+00	712.00
IUUC-Opr-070906	Ochotona princeps	93.47	0.00e+00	770.00
IUUC-Ont-071661	Oreochromis niloticus	67.72	5.00e-165	573.00
IUUC-Oan-073465	Ornithorhynchus anatinus	71.29	1.00e-147	516.00
IUUC-Ocu-074263	Oryctolagus cuniculus	93.91	0.00e+00	768.00
IUUC-Oba-075607	Oryza barthii	37.29	1.00e-61	230.00
IUUC-Ogl-077387	Oryza glaberrima	36.51	4.00e-64	238.00
IUUC-Ogu-078323	Oryza glumaepatula	37.33	3.00e-64	239.00
IUUC-Oin-079977	Oryza indica	30.93	5.00e-42	165.00
IUUC-Olo-080857	Oryza longistaminata	37.24	2.00e-64	239.00
IUUC-Ome-081568	Oryza meridionalis	36.98	8.00e-64	238.00
IUUC-Oni-082685	Oryza nivara	37.33	2.00e-67	249.00
IUUC-Opu-084049	Oryza punctata	37.33	3.00e-64	239.00
IUUC-Oru-084348	Oryza rufipogon	37.33	2.00e-67	249.00
IUUC-Osa-086076	Oryza sativa	37.33	2.00e-67	249.00
IUUC-Ola-086991	Oryzias latipes	69.87	2.00e-163	568.00
IUUC-Olu-087891	Ostreococcus lucimarinus	35.92	3.00e-64	238.00
IUUC-Oga-088991	Otolemur garnettii	93.72	0.00e+00	766.00
IUUC-Oar-090430	Ovis aries	93.33	0.00e+00	724.00
IUUC-Pan-092499	Papio anubis	98.41	0.00e+00	793.00
IUUC-Pma-094447	Petromyzon marinus	61.78	5.00e-128	450.00
IUUC-Pno-095008	Phaeosphaeria nodorum	30.39	1.00e-62	234.00
IUUC-Ppa-095680	Physcomitrella patens	38.89	5.00e-76	278.00
IUUC-Pfo-096430	Poecilia formosa	69.10	1.00e-164	573.00
IUUC-Pab-097649	Pongo abelii	99.09	0.00e+00	796.00
IUUC-Pop-100055	Populus trichocarpa	40.00	5.00e-78	285.00
IUUC-Pca-100317	Procavia capensis	75.83	4.00e-133	467.00
IUUC-Ppe-101999	Prunus persica	37.93	2.00e-78	286.00
IUUC-Pva-103046	Pteropus vampyrus	94.03	0.00e+00	754.00
IUUC-Pgr-103655	Puccinia graminis	30.04	2.00e-53	203.00
IUUC-Ptt-103812	Puccinia triticina	31.10	1.00e-47	184.00
IUUC-Pte-104243	Pyrenophora teres	29.92	4.00e-56	212.00
IUUC-Pyt-104512	Pyrenophora triticirepentis	29.90	2.00e-58	220.00
IUUC-Rno-104973	Rattus norvegicus	95.59	0.00e+00	751.00
IUUC-Sce-106329	Saccharomyces cerevisiae	26.04	6.00e-50	191.00
IUUC-Sha-106941	Sarcophilus harrisii	85.61	0.00e+00	679.00
IUUC-Sja-107821	Schizosaccharomyces japonicus	32.81	3.00e-62	232.00
IUUC-Spo-108329	Schizosaccharomyces pombe	36.34	6.00e-72	265.00
IUUC-Ssl-108552	Sclerotinia sclerotiorum	29.35	3.00e-59	222.00
IUUC-Smo-109198	Selaginella moellendorffii	37.09	6.00e-62	231.00
IUUC-Sit-109694	Setaria italica	36.23	2.00e-71	263.00
IUUC-Sly-111294	Solanum lycopersicum	37.88	5.00e-78	285.00
IUUC-Stu-112747	Solanum tuberosum	38.38	3.00e-79	289.00
IUUC-Sar-113315	Sorex araneus	75.92	1.00e-74	273.00
IUUC-Sbi-114694	Sorghum bicolor	35.70	6.00e-70	258.00
IUUC-Sre-114937	Sporisorium reilianum	29.07	2.00e-65	243.00
IUUC-Ssc-116127	Sus scrofa	94.24	0.00e+00	740.00
IUUC-Tgu-117242	Taeniopygia guttata	70.24	6.00e-107	379.00
IUUC-Tru-118285	Takifugu rubripes	67.77	3.00e-167	581.00
IUUC-Tni-120368	Tetraodon nigroviridis	67.51	8.00e-161	560.00
IUUC-Tca-121724	Theobroma cacao	36.80	2.00e-72	266.00
IUUC-Tre-122106	Trichoderma reesei	33.69	3.00e-68	252.00
IUUC-Tvi-122526	Trichoderma virens	33.13	3.00e-68	252.00
IUUC-Tae-122939	Triticum aestivum	36.91	1.00e-66	247.00
IUUC-Tur-126548	Triticum urartu	36.91	1.00e-66	247.00
IUUC-Tme-126985	Tuber melanosporum	34.35	7.00e-63	234.00
IUUC-Tbe-127923	Tupaia belangeri	96.23	0.00e+00	741.00
IUUC-Ttr-129308	Tursiops truncatus	88.92	0.00e+00	673.00
IUUC-Uma-129472	Ustilago maydis	30.64	1.00e-59	224.00
IUUC-Vda-129910	Verticillium dahliae	31.57	3.00e-63	236.00
IUUC-Vvi-131683	Vitis vinifera	38.76	7.00e-85	307.00
IUUC-Xtr-132118	Xenopus tropicalis	67.40	5.00e-157	547.00
IUUC-Xma-133804	Xiphophorus maculatus	68.59	6.00e-163	566.00
IUUC-Yli-134639	Yarrowia lipolytica	32.78	2.00e-61	229.00
IUUC-Zma-135884	Zea mays	36.34	9.00e-71	260.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence