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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105225
Ensembl Protein ID ENSRNOP00000008355.4
UniProt Accession D3ZQM0; D3ZQM0_RAT
Genbank Protein ID EDM00216.1
Protein Name Splicing factor 3a, subunit 1; Splicing factor 3a, subunit 1 (Predicted)
Genbank Nucleotide ID AC119662
Gene Name Sf3a1; Sf3a1_predicted; rCG_35724
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000005218.5 ENSRNOT00000008355.5 ENSRNOP00000008355.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLMdbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
ULD/UDP/UBQ/UBQ_Other 2.80e-16 59.6 705 788
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UDP/UBQ/UBQ_Other
   S: 1    vqvtvksldgs.eltlk.......vnpsdtVaeLKekiekklgippeqqrLiykGkiLeddktLadyglkdgstihllekksgg 76
           ++v+v++++++ e++l+       ++ +d+V+++K ki++++g+p+ +q+L+y+G+ ++d ++La+y++  g +ihl +k++gg
   Q: 705  IKVQVPNMQDKtEWKLNgqglvftLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERGG 788
           689**************999865458888**************************************************99875 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MQAGPVQAVP PPPPVVTEPK QPNEEEASSK EDSTPSKPVV GIIYPPPEVR NIVDKTASFV 60
ARNGPEFEAR IRQNEINNPK FNFLNPNDPY HAYYRHKVSE FKEGKAQEPS AAIPKVMQQQ 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105225|ULD,UBQ_Other|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GTGCCTCCGC GGCTTTTCTC TGGGTCGTCG CCATCTTGCC ATTGAGTTGG AGACTTCGTG 60
TGGTGAGCTT AACCTTGTCG CCGTACCGGT TGTCCACACC GAGGCGGACT GGCAGCCCTG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105225|ULD,UBQ_Other|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR022030--SF3A1
IPR000061--Surp
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
PROSITE

PS50128--SURP
PS50053--UBIQUITIN_2
Pfam

PF12230--PRP21_like_P
PF01805--Surp
PF00240--ubiquitin
SMART

SM00648--SWAP
SM00213--UBQ
Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0016607--C:nuclear speck
GO:0005686--C:U2 snRNP
GO:0071004--C:U2-type prespliceosome
GO:0003723--F:RNA binding
GO:0000389--P:mRNA 3'-splice site recognition
GO:0000381--P:regulation of alternative mRNA splicing, via spliceosome
KEGG rno:305479
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000319 Aegilops tauschii 35.37 2.00e-48 187.00
IUUC-Aml-002416 Ailuropoda melanoleuca 97.67 0.00e+00 1116.00
IUUC-Atr-003001 Amborella trichopoda 48.57 5.00e-65 242.00
IUUC-Apl-003584 Anas platyrhynchos 91.55 0.00e+00 928.00
IUUC-Aca-004690 Anolis carolinensis 85.50 0.00e+00 1006.00
IUUC-Aly-005487 Arabidopsis lyrata 44.81 1.00e-55 211.00
IUUC-Ath-007275 Arabidopsis thaliana 44.40 4.00e-57 216.00
IUUC-Acl-008320 Aspergillus clavatus 43.21 5.00e-48 185.00
IUUC-Afl-008707 Aspergillus flavus 46.03 2.00e-58 219.00
IUUC-Afu-008786 Aspergillus fumigatus 41.46 7.00e-47 181.00
IUUC-Ani-009307 Aspergillus nidulans 44.60 5.00e-53 202.00
IUUC-Ang-009761 Aspergillus niger 46.18 3.00e-57 216.00
IUUC-Aor-010067 Aspergillus oryzae 46.03 2.00e-58 220.00
IUUC-Ate-010515 Aspergillus terreus 45.03 2.00e-58 219.00
IUUC-Ame-011842 Astyanax mexicanus 80.20 0.00e+00 803.00
IUUC-Bgr-012204 Blumeria graminis 35.06 1.00e-64 240.00
IUUC-Bta-013525 Bos taurus 98.04 0.00e+00 1111.00
IUUC-Bci-013842 Botrytis cinerea 46.07 1.00e-49 191.00
IUUC-Bdi-014436 Brachypodium distachyon 36.54 4.00e-74 272.00
IUUC-Bol-015903 Brassica oleracea 45.49 5.00e-53 202.00
IUUC-Bra-017856 Brassica rapa 37.20 4.00e-56 213.00
IUUC-Cel-018261 Caenorhabditis elegans 50.69 2.00e-80 293.00
IUUC-Cja-018989 Callithrix jacchus 97.92 0.00e+00 1103.00
IUUC-Cfa-020629 Canis familiaris 97.78 0.00e+00 1108.00
IUUC-Cpo-021759 Cavia porcellus 97.40 0.00e+00 1103.00
IUUC-Cre-022603 Chlamydomonas reinhardtii 38.93 2.00e-22 100.00
IUUC-Csa-023750 Chlorocebus sabaeus 97.80 0.00e+00 1103.00
IUUC-Cho-024581 Choloepus hoffmanni 98.52 8.00e-123 434.00
IUUC-Cin-025640 Ciona intestinalis 57.85 5.00e-147 514.00
IUUC-Csv-025855 Ciona savignyi 66.67 2.00e-102 367.00
IUUC-Cgl-026573 Colletotrichum gloeosporioides 42.27 8.00e-46 178.00
IUUC-Cne-026952 Cryptococcus neoformans 42.86 8.00e-49 188.00
IUUC-Dre-028055 Danio rerio 82.59 0.00e+00 771.00
IUUC-Dno-029259 Dasypus novemcinctus 97.53 0.00e+00 1114.00
IUUC-Dor-031081 Dipodomys ordii 97.15 0.00e+00 1105.00
IUUC-Dse-031438 Dothistroma septosporum 39.79 6.00e-48 185.00
IUUC-Dme-031975 Drosophila melanogaster 60.19 3.00e-148 519.00
IUUC-Ete-033177 Echinops telfairi 94.76 0.00e+00 878.00
IUUC-Eca-033670 Equus caballus 97.92 0.00e+00 1115.00
IUUC-Eeu-035100 Erinaceus europaeus 92.20 0.00e+00 693.00
IUUC-Fca-036176 Felis catus 97.91 0.00e+00 1109.00
IUUC-Fal-036776 Ficedula albicollis 90.99 0.00e+00 728.00
IUUC-Fox-037706 Fusarium oxysporum 40.83 8.00e-49 187.00
IUUC-Fso-038313 Fusarium solani 42.81 1.00e-44 174.00
IUUC-Gmo-038887 Gadus morhua 79.90 0.00e+00 797.00
IUUC-Ggr-039932 Gaeumannomyces graminis 38.40 5.00e-35 142.00
IUUC-Gga-041184 Gallus gallus 90.20 0.00e+00 901.00
IUUC-Gac-042118 Gasterosteus aculeatus 82.50 0.00e+00 793.00
IUUC-Gma-042726 Glycine max 46.02 1.00e-18 88.60
IUUC-Ggo-045641 Gorilla gorilla 95.04 0.00e+00 1091.00
IUUC-Hsa-045751 Homo sapiens 97.78 0.00e+00 1096.00
IUUC-Hvu-047702 Hordeum vulgare 32.54 2.00e-30 127.00
IUUC-Itr-047960 Ictidomys tridecemlineatus 98.05 0.00e+00 1117.00
IUUC-Kpa-049400 Komagataella pastoris 29.66 2.00e-31 130.00
IUUC-Lch-050152 Latimeria chalumnae 85.60 0.00e+00 723.00
IUUC-Lpe-051570 Leersia perrieri 45.78 1.00e-32 135.00
IUUC-Loc-051753 Lepisosteus oculatus 84.43 0.00e+00 821.00
IUUC-Lma-053219 Leptosphaeria maculans 36.33 1.00e-34 140.00
IUUC-Laf-053643 Loxodonta africana 97.54 0.00e+00 1074.00
IUUC-Mcc-055091 Macaca mulatta 97.67 0.00e+00 1103.00
IUUC-Meu-056036 Macropus eugenii 85.19 0.00e+00 797.00
IUUC-Mor-057214 Magnaporthe oryzae 37.36 7.00e-35 141.00
IUUC-Mpo-057385 Magnaporthe poae 30.00 1.00e-12 67.00
IUUC-Mtr-057954 Medicago truncatula 38.55 1.00e-81 297.00
IUUC-Mla-059020 Melampsora laricipopulina 36.42 6.00e-49 189.00
IUUC-Mga-060176 Meleagris gallopavo 91.53 0.00e+00 930.00
IUUC-Mvi-060278 Microbotryum violaceum 33.39 1.00e-73 271.00
IUUC-Mmr-061602 Microcebus murinus 97.54 0.00e+00 1127.00
IUUC-Mdo-062047 Monodelphis domestica 95.45 0.00e+00 1055.00
IUUC-Mmu-063377 Mus musculus 99.48 0.00e+00 1122.00
IUUC-Mac-065644 Musa acuminata 46.52 1.00e-60 228.00
IUUC-Mpu-066047 Mustela putorius furo 97.54 0.00e+00 1116.00
IUUC-Mlu-067039 Myotis lucifugus 97.80 0.00e+00 1082.00
IUUC-Nfi-068434 Neosartorya fischeri 45.96 2.00e-53 203.00
IUUC-Ncr-068912 Neurospora crassa 39.78 9.00e-40 158.00
IUUC-Nle-069540 Nomascus leucogenys 97.80 0.00e+00 1103.00
IUUC-Opr-071157 Ochotona princeps 97.53 0.00e+00 1091.00
IUUC-Ont-072229 Oreochromis niloticus 83.33 0.00e+00 962.00
IUUC-Oan-073616 Ornithorhynchus anatinus 98.23 1.00e-31 129.00
IUUC-Ocu-074002 Oryctolagus cuniculus 97.79 0.00e+00 1110.00
IUUC-Oba-075659 Oryza barthii 34.53 2.00e-35 143.00
IUUC-Obr-076465 Oryza brachyantha 46.25 1.00e-33 138.00
IUUC-Ogl-077461 Oryza glaberrima 37.80 6.00e-54 205.00
IUUC-Ogu-078515 Oryza glumaepatula 38.36 5.00e-54 206.00
IUUC-Oin-080201 Oryza indica 46.88 3.00e-33 137.00
IUUC-Olo-080751 Oryza longistaminata 34.53 2.00e-35 144.00
IUUC-Ome-081201 Oryza meridionalis 37.04 3.00e-75 276.00
IUUC-Oni-082951 Oryza nivara 46.88 4.00e-33 136.00
IUUC-Opu-083560 Oryza punctata 35.28 7.00e-65 242.00
IUUC-Oru-084440 Oryza rufipogon 37.80 5.00e-54 206.00
IUUC-Osa-085699 Oryza sativa 37.80 6.00e-54 205.00
IUUC-Ola-086705 Oryzias latipes 80.03 0.00e+00 944.00
IUUC-Olu-087794 Ostreococcus lucimarinus 34.62 1.00e-53 204.00
IUUC-Oga-088896 Otolemur garnettii 97.67 0.00e+00 1105.00
IUUC-Oar-090155 Ovis aries 97.32 0.00e+00 882.00
IUUC-Ptr-090754 Pan troglodytes 97.65 0.00e+00 1094.00
IUUC-Pan-092464 Papio anubis 97.80 0.00e+00 1103.00
IUUC-Psi-093166 Pelodiscus sinensis 91.95 0.00e+00 738.00
IUUC-Pma-094280 Petromyzon marinus 85.04 1.00e-127 449.00
IUUC-Pno-095106 Phaeosphaeria nodorum 37.32 5.00e-31 129.00
IUUC-Ppa-095510 Physcomitrella patens 47.62 8.00e-57 215.00
IUUC-Pfo-096212 Poecilia formosa 75.57 1.00e-175 610.00
IUUC-Pab-098482 Pongo abelii 97.80 0.00e+00 1103.00
IUUC-Pop-099479 Populus trichocarpa 44.37 4.00e-56 213.00
IUUC-Pca-100776 Procavia capensis 97.52 1.00e-73 271.00
IUUC-Ppe-101595 Prunus persica 43.14 7.00e-60 225.00
IUUC-Pva-102981 Pteropus vampyrus 96.78 0.00e+00 1040.00
IUUC-Pgr-103503 Puccinia graminis 34.09 3.00e-69 256.00
IUUC-Ptt-103994 Puccinia triticina 38.44 4.00e-46 180.00
IUUC-Pte-104226 Pyrenophora teres 35.40 5.00e-36 145.00
IUUC-Pyt-104732 Pyrenophora triticirepentis 35.55 2.00e-39 156.00
IUUC-Sce-106278 Saccharomyces cerevisiae 22.91 6.00e-11 61.20
IUUC-Sha-107353 Sarcophilus harrisii 93.32 0.00e+00 999.00
IUUC-Sja-107876 Schizosaccharomyces japonicus 41.37 4.00e-51 195.00
IUUC-Spo-108266 Schizosaccharomyces pombe 41.58 3.00e-52 199.00
IUUC-Ssl-108518 Sclerotinia sclerotiorum 45.74 4.00e-54 205.00
IUUC-Smo-109675 Selaginella moellendorffii 43.93 4.00e-51 196.00
IUUC-Sit-110019 Setaria italica 36.78 4.00e-51 196.00
IUUC-Sly-111621 Solanum lycopersicum 45.65 5.00e-63 235.00
IUUC-Stu-112703 Solanum tuberosum 46.35 7.00e-64 238.00
IUUC-Sar-113166 Sorex araneus 94.30 0.00e+00 1025.00
IUUC-Sbi-114746 Sorghum bicolor 36.90 6.00e-52 199.00
IUUC-Sre-115196 Sporisorium reilianum 40.27 2.00e-50 193.00
IUUC-Ssc-115573 Sus scrofa 98.04 0.00e+00 1111.00
IUUC-Tgu-117284 Taeniopygia guttata 91.42 0.00e+00 922.00
IUUC-Tru-118236 Takifugu rubripes 78.28 0.00e+00 909.00
IUUC-Tsy-119219 Tarsius syrichta 94.86 0.00e+00 995.00
IUUC-Tni-119929 Tetraodon nigroviridis 81.78 3.00e-101 362.00
IUUC-Tca-121156 Theobroma cacao 44.70 1.00e-60 228.00
IUUC-Tre-122179 Trichoderma reesei 42.60 6.00e-45 175.00
IUUC-Tvi-122326 Trichoderma virens 41.20 8.00e-48 184.00
IUUC-Tae-124313 Triticum aestivum 36.42 2.00e-70 260.00
IUUC-Tur-126352 Triticum urartu 34.97 1.00e-48 188.00
IUUC-Tme-126996 Tuber melanosporum 42.80 3.00e-51 196.00
IUUC-Tbe-127271 Tupaia belangeri 90.40 0.00e+00 968.00
IUUC-Ttr-128433 Tursiops truncatus 95.83 0.00e+00 1105.00
IUUC-Uma-129357 Ustilago maydis 31.01 1.00e-47 184.00
IUUC-Vda-130010 Verticillium dahliae 40.86 1.00e-42 167.00
IUUC-Vvi-131734 Vitis vinifera 39.41 4.00e-79 289.00
IUUC-Xtr-132013 Xenopus tropicalis 85.17 0.00e+00 986.00
IUUC-Xma-134244 Xiphophorus maculatus 75.83 0.00e+00 892.00
IUUC-Yli-134579 Yarrowia lipolytica 35.91 7.00e-31 128.00
IUUC-Zma-135716 Zea mays 37.01 7.00e-53 202.00
Created Date 25-Jun-2017

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