iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bra-018079

Ensembl Protein ID

Bra013814.1-P

UniProt Accession

M4DBF4; M4DBF4_BRARP

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bra013814	Bra013814.1	Bra013814.1-P

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	5.20e-76	257.0	553	858

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqqDaqEfl 96
           +Gl N gN+C+ N v QcL+++p+l+ ++l++++++      +++++++++ +++l+ +  ++ k++ sp+ ll +l+++  ++ + +q+Da+Efl
   Q: 553  CGLINSGNSCFANVVFQCLMFTPPLTTYFLQRYHSRAC----PNKEQCFTCGFENLVLKA-TEGKSSLSPNGLLLQLQNIGISLGNGKQEDAHEFL 643
           7******************************6665544....46789**********999.788889***************************** PP
   S: 97   aflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkeetkkeslqdcLe 192
           +f++d++++ + k        +       ++ + ++  k + ++li  +F+g l+s+ikc +c+++s+r+e+++dl++++ g+ +    +l+d+L+
   Q: 644  RFVVDTMQSLCIK--------A-------SEYDMPKTRKLEDTTLIGLTFGGYLRSKIKCMKCQEKSERREKMMDLTVEIDGDIS----TLEDALR 720
           ***********22........2.......22335677888899*****************************************6....7****** PP
   S: 193  sftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfctspeekqkekkkYeLiavvvHsG 288
            ft++e l+genky+c +ck++ +a+kklk+++ P+vL++ LkRf   ++ ++  k+nk v fp++Ldl+p+++  +ek   ++ Y+L++v+vH  
   Q: 721  RFTRTEILDGENKYKCGSCKSYERAKKKLKITEPPNVLTIALKRF---QS-GKFGKLNKLVRFPETLDLAPYVSGGSEK---SHDYKLYGVIVHLD 809
           *********************************************...33.4557*******************95544...8***********87 PP
   S: 289  ...slssGHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
               + sGHYv+y++n+++kW++ dD++V +++ e+vl+   + aY+lfY r
   Q: 810  vmnAAFSGHYVCYIRNSQNKWYKADDNTVVTSDVERVLT---KGAYMLFYAR 858
           3325569********************************...********87 PP

Organism

Brassica rapa

Protein Sequence
(Fasta)

MLLVLDLGLS SLVLVISLLA IPLVGFVVRR QWRLAALRRE EIRRLLIHAS EEAARVEREA 60
SVEFSFAPVV ANSFYCPVCY CPALTRCSRC KAVRYCSGKC QIIHWRQGHK DECQPASITY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTCCTCG TCTTGGATCT AGGGCTCTCT AGTCTAGTCC TTGTGATCTC TCTGCTAGCT 60
ATACCTCTGG TTGGCTTCGT TGTTCGCCGC CAGTGGAGGC TCGCGGCTCT GAGAAGGGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS01360--ZF_MYND_1
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000401	Aegilops tauschii	57.77	1.00e-123	437.00
IUUC-Atr-002920	Amborella trichopoda	58.17	2.00e-136	480.00
IUUC-Aly-005811	Arabidopsis lyrata	76.54	0.00e+00	1326.00
IUUC-Ath-006972	Arabidopsis thaliana	76.52	0.00e+00	1233.00
IUUC-Bdi-014317	Brachypodium distachyon	57.18	3.00e-128	452.00
IUUC-Bol-016473	Brassica oleracea	94.28	0.00e+00	1630.00
IUUC-Gma-043324	Glycine max	47.27	2.00e-142	499.00
IUUC-Hvu-047748	Hordeum vulgare	56.28	1.00e-119	424.00
IUUC-Mtr-058629	Medicago truncatula	42.84	2.00e-153	536.00
IUUC-Mac-065141	Musa acuminata	54.36	2.00e-133	469.00
IUUC-Obr-076357	Oryza brachyantha	56.14	6.00e-125	441.00
IUUC-Olo-080489	Oryza longistaminata	54.12	6.00e-117	414.00
IUUC-Ppe-101801	Prunus persica	59.91	1.00e-151	530.00
IUUC-Sly-111806	Solanum lycopersicum	65.19	1.00e-145	510.00
IUUC-Sbi-114259	Sorghum bicolor	58.27	3.00e-122	432.00
IUUC-Tca-121756	Theobroma cacao	45.61	0.00e+00	665.00
IUUC-Tae-125220	Triticum aestivum	58.04	3.00e-124	439.00
IUUC-Vvi-130946	Vitis vinifera	57.63	2.00e-157	549.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence