iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098941

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

UBIQUITIN-SPECIFIC PROTEASE 16 family protein

Genbank Nucleotide ID

CM000338

Gene Name

POPTRDRAFT_551649; POPTR_0002s10500g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0002s10500	POPTR_0002s10500.1	POPTR_0002s10500.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	8.20e-74	249.9	603	907

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqq 90
           +Gl N gN+CY N+vLQcL+++p+l++++ +  +++++      +++ +++++++k++ +  k+ k+  sp  +l++l+++ +++ + +++
   Q: 603  CGLINCGNSCYANAVLQCLAFTPPLTSYFVQgLHSKAC-----VKKERCFSCEFEKVILKA-KEGKSPLSPIGILSQLQNIGSQLGNGREE 687
           7******************************5555555.....45678**********888.99999************************ PP
   S: 91   DaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkee 181
           Da+Efl++ +d++++ + k       e+         + +  +  +++ +li  +F+g l+s+ikc +c+ +s+ +e ++dl+++++g+  
   Q: 688  DAHEFLRYAIDAMQSVCLK-------EA---------RVNAVDSFEEEATLIGLTFGGYLRSKIKCMKCHYKSEWQERMMDLTVEIEGDIG 762
           *****************22.......22.........2234556678899***************************************95 PP
   S: 182  tkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfctspeekq 272
               +l+d+L+ ft +e l+g+nky+c +c+++ +a+kkl++ + P+vL++ LkRf   ++ ++  k+nk++ fp+ Ldl+p+++ +++k 
   Q: 763  ----KLEDALRRFTGTEILDGDNKYQCGRCRSYEKAKKKLTILEAPNVLTIALKRF---QS-GKFGKLNKSIRFPEILDLAPYMSGTSDK- 844
           ....8***************************************************...33.4557********************6655. PP
   S: 273  kekkkYeLiavvvHsG...slssGHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
             + +Y+L++v+vH      + sGHYv+yvkn ++kW+++dDs+Vt+v+ e+vl+   + aY+l+Y r
   Q: 845  --SPIYRLYGVIVHLDvmnAAFSGHYVCYVKNIQNKWFKIDDSTVTAVELERVLS---KGAYMLLYAR 907
           ..79**********873325569********************************...********87 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MHVEGDLGFS SLVVLVFCVV VIPVGWFVIR CKWRGVVARK EEINRLMVLA AEEAARAEFE 60
ATVSYSTVPV SYGTVPVSKN NYQCVVCFCP RTTRCSRCKA VRYCSGKCQI IHWRQGHKEE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCATGTCG AGGGGGATCT AGGGTTTTCG AGCCTAGTGG TCCTTGTTTT CTGTGTAGTG 60
GTTATTCCGG TGGGTTGGTT TGTAATTAGG TGTAAATGGC GGGGAGTGGT TGCGAGAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0472--Membrane
KW-0645--Protease
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS00972--USP_1
PS50235--USP_3
PS01360--ZF_MYND_1
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0002s10500g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000401	Aegilops tauschii	65.50	5.00e-147	514.00
IUUC-Ath-006972	Arabidopsis thaliana	44.40	2.00e-179	622.00
IUUC-Bdi-014317	Brachypodium distachyon	66.31	1.00e-149	523.00
IUUC-Bol-015264	Brassica oleracea	63.51	2.00e-158	552.00
IUUC-Hvu-047748	Hordeum vulgare	62.01	6.00e-141	494.00
IUUC-Lpe-051561	Leersia perrieri	61.26	6.00e-144	504.00
IUUC-Oba-075163	Oryza barthii	64.52	3.00e-143	502.00
IUUC-Obr-076143	Oryza brachyantha	56.96	4.00e-147	514.00
IUUC-Ogl-077565	Oryza glaberrima	64.52	2.00e-143	502.00
IUUC-Ogu-078443	Oryza glumaepatula	64.52	2.00e-143	503.00
IUUC-Oin-079111	Oryza indica	67.92	6.00e-143	501.00
IUUC-Olo-080489	Oryza longistaminata	63.17	8.00e-138	483.00
IUUC-Ome-081510	Oryza meridionalis	65.46	2.00e-140	492.00
IUUC-Oni-082570	Oryza nivara	64.52	3.00e-143	502.00
IUUC-Opu-084076	Oryza punctata	62.05	2.00e-143	503.00
IUUC-Oru-084237	Oryza rufipogon	64.52	3.00e-143	502.00
IUUC-Osa-085297	Oryza sativa	64.52	3.00e-143	502.00
IUUC-Sit-110237	Setaria italica	65.05	1.00e-142	500.00
IUUC-Sly-111806	Solanum lycopersicum	70.85	5.00e-162	564.00
IUUC-Sbi-114259	Sorghum bicolor	60.58	1.00e-140	493.00
IUUC-Tae-125414	Triticum aestivum	65.50	7.00e-148	517.00
IUUC-Tur-126736	Triticum urartu	65.50	8.00e-148	517.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence