iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006823

UUCD1 version

UUC-ArT-00504

Ensembl Protein ID

AT5G05230.1

UniProt Accession

Q6DBN5; Q9FLD1; PUB62_ARATH

Genbank Protein ID

BAB09966.1; AED90844.1; AAT70438.1; AAU94412.1; BAF00418.1

Protein Name

U-box domain-containing protein 62; Plant U-box protein 62; RING-type E3 ubiquitin transferase PUB62

Genbank Nucleotide ID

AB010692; CP002688; BT014987; BT015849; AK228492

Gene Name

PUB62; At5g05230; K18I23.3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G05230	AT5G05230.1	AT5G05230.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	3.80e-13	50.2	186	252

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 6    flCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           + +p ++ lM d ++lp+G+t+ +  Ie+   +++k c +++qp++e++++Pnltlr  +qa+c e++s
   Q: 186  LSDPTTGSLMADAMILPCGHTFGAGGIEQ--VKQMKACCTCSQPVSEDSITPNLTLRVAVQAFCREENS 252
           689**************************..799999***************************99875 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP 60
HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED DDLDGNEGDI GMNKDAGEDS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTAGAATCTG AGCCTGACGT CTGTTGCGGT TGATACGTCA CCGTTTCTTA CTTCGTTTAT 60
CTTCTCTCCA AACGACGCCA TTTCTCCTTC CCTTCTTCTT CTTCCTCTTT AGTCTTTTTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT5G05230

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000192	Aegilops tauschii	53.06	2.00e-49	188.00
IUUC-Atr-002682	Amborella trichopoda	58.72	1.00e-61	229.00
IUUC-Aly-005602	Arabidopsis lyrata	96.16	2.00e-169	587.00
IUUC-Aor-010063	Aspergillus oryzae	34.21	1.10e-02	33.10
IUUC-Bol-015470	Brassica oleracea	80.33	6.00e-141	493.00
IUUC-Bra-017015	Brassica rapa	79.62	1.00e-144	504.00
IUUC-Gma-044133	Glycine max	61.16	1.00e-72	266.00
IUUC-Hvu-047241	Hordeum vulgare	54.79	1.00e-19	86.70
IUUC-Mtr-058650	Medicago truncatula	60.78	1.00e-72	266.00
IUUC-Mac-065387	Musa acuminata	58.17	2.00e-63	235.00
IUUC-Oba-075942	Oryza barthii	55.20	3.00e-57	214.00
IUUC-Obr-076573	Oryza brachyantha	56.11	3.00e-59	221.00
IUUC-Ogl-077795	Oryza glaberrima	52.36	2.00e-54	205.00
IUUC-Ogu-078142	Oryza glumaepatula	55.66	5.00e-58	217.00
IUUC-Ome-081788	Oryza meridionalis	48.42	2.00e-46	179.00
IUUC-Oni-082512	Oryza nivara	58.50	2.00e-56	213.00
IUUC-Opu-083147	Oryza punctata	61.41	7.00e-58	216.00
IUUC-Oru-085135	Oryza rufipogon	58.50	2.00e-56	213.00
IUUC-Ppa-095972	Physcomitrella patens	54.22	1.00e-46	180.00
IUUC-Pop-099896	Populus trichocarpa	60.67	2.00e-78	285.00
IUUC-Ppe-101532	Prunus persica	59.00	5.00e-71	261.00
IUUC-Smo-109655	Selaginella moellendorffii	48.85	7.00e-42	163.00
IUUC-Sly-111788	Solanum lycopersicum	57.59	1.00e-75	276.00
IUUC-Stu-112107	Solanum tuberosum	56.81	1.00e-75	276.00
IUUC-Sbi-113910	Sorghum bicolor	54.67	3.00e-53	201.00
IUUC-Tca-121309	Theobroma cacao	58.78	7.00e-74	270.00
IUUC-Tae-124140	Triticum aestivum	58.06	2.00e-55	208.00
IUUC-Vvi-131465	Vitis vinifera	58.96	3.00e-78	284.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence