iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mcc-055860

Ensembl Protein ID

ENSMMUP00000061075.1

UniProt Accession

G7NLC4; G7NLC4_MACMU

Genbank Protein ID

AFH33433.1; EHH29697.1

Protein Name

UV excision repair protein RAD23 homolog A; UV excision repair protein RAD23-like protein A

Genbank Nucleotide ID

JSUE03020838; CM001271

Gene Name

RAD23A; EGK_10185

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSMMUG00000004393.2	ENSMMUT00000059099.1	ENSMMUP00000061075.1
ENSMMUG00000004393.2	ENSMMUT00000072994.1	ENSMMUP00000057900.1
ENSMMUG00000004393.2	ENSMMUT00000006239.2	ENSMMUP00000005870.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.40e-20	73.8	162	201
ULD/UDP/UBQ/UBQ_PIM	7.70e-26	91.0	3	80

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 2    ededkleqlveMGFdreealqaLraannnleaAveyLldg 41
           e+e +l ++++MG++re+++ aLra++nn+ +AveyLl+g
   Q: 162  EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 201
           7899**********************************97 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           +++t+ktl++++f++++++d+tv+ lKeki++e+g   +p++ qkLIyaGkiL+Dd +++++ i+++++v+++v+k+k
   Q: 3    VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGrdaFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 80
           68*************************************************************************987 PP

Organism

Macaca mulatta

Protein Sequence
(Fasta)

MAVTITLKTL QQQTFKIRME PDETVKVLKE KIEAEKGRDA FPVAGQKLIY AGKILSDDVP 60
IRDYRIDEKN FVVVMVTKTK AGQGTSAPPE ASPTAAPESS TSFPPAPTSG MSHPQPAARE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCCGTGAC GTCACCGCTA ACGGGCATGG CGTCACTTTG GAGACCTCGT GTGCTGGCAG 60
AATGAGAAGC CCCGTCCCCG CCCACGCCCA CAACGCGGAG TTTAGTCTGC GCATGCCTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005815--C:microtubule organizing center
GO:0005654--C:nucleoplasm
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0045070--P:positive regulation of viral genome replication
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0032434--P:regulation of proteasomal ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000770	Aegilops tauschii	38.11	2.00e-32	133.00
IUUC-Aml-001515	Ailuropoda melanoleuca	92.76	2.00e-143	502.00
IUUC-Atr-003116	Amborella trichopoda	41.56	9.00e-31	127.00
IUUC-Aca-004704	Anolis carolinensis	78.49	6.00e-113	400.00
IUUC-Aly-006159	Arabidopsis lyrata	34.66	3.00e-51	195.00
IUUC-Ani-009460	Aspergillus nidulans	38.80	3.00e-29	122.00
IUUC-Bgr-012056	Blumeria graminis	35.44	1.00e-21	97.40
IUUC-Bta-012377	Bos taurus	95.87	2.00e-147	515.00
IUUC-Bci-013933	Botrytis cinerea	37.31	7.00e-21	94.70
IUUC-Bdi-014718	Brachypodium distachyon	30.60	1.00e-40	160.00
IUUC-Bol-015272	Brassica oleracea	34.66	4.00e-52	198.00
IUUC-Bra-016970	Brassica rapa	35.11	3.00e-51	195.00
IUUC-Cel-018364	Caenorhabditis elegans	31.71	1.00e-28	120.00
IUUC-Cja-018946	Callithrix jacchus	98.35	2.00e-148	518.00
IUUC-Cfa-020577	Canis familiaris	96.97	6.00e-154	536.00
IUUC-Cpo-021850	Cavia porcellus	93.11	3.00e-167	580.00
IUUC-Csa-023183	Chlorocebus sabaeus	100.00	2.00e-157	548.00
IUUC-Csv-025823	Ciona savignyi	41.09	2.00e-37	149.00
IUUC-Cgl-026495	Colletotrichum gloeosporioides	33.00	1.00e-21	97.10
IUUC-Cne-027056	Cryptococcus neoformans	44.87	2.00e-12	67.00
IUUC-Cme-027260	Cyanidioschyzon merolae	26.54	1.00e-23	104.00
IUUC-Dno-030017	Dasypus novemcinctus	92.09	2.00e-128	451.00
IUUC-Dor-030358	Dipodomys ordii	84.34	3.00e-125	441.00
IUUC-Dme-032027	Drosophila melanogaster	39.10	2.00e-62	233.00
IUUC-Eca-033599	Equus caballus	93.22	2.00e-137	481.00
IUUC-Fca-036051	Felis catus	96.42	5.00e-153	533.00
IUUC-Fso-038107	Fusarium solani	35.82	7.00e-21	94.70
IUUC-Gmo-038528	Gadus morhua	57.73	3.00e-89	321.00
IUUC-Gga-040133	Gallus gallus	86.98	5.00e-75	274.00
IUUC-Gac-042239	Gasterosteus aculeatus	55.44	5.00e-90	324.00
IUUC-Gma-044245	Glycine max	36.27	5.00e-54	204.00
IUUC-Ggo-045084	Gorilla gorilla	99.72	8.00e-156	543.00
IUUC-Hsa-046614	Homo sapiens	99.72	2.00e-156	545.00
IUUC-Hvu-047832	Hordeum vulgare	39.34	3.00e-32	132.00
IUUC-Itr-047875	Ictidomys tridecemlineatus	97.25	1.00e-174	605.00
IUUC-Lch-050563	Latimeria chalumnae	62.56	6.00e-105	374.00
IUUC-Loc-051758	Lepisosteus oculatus	59.88	4.00e-87	314.00
IUUC-Lma-053328	Leptosphaeria maculans	50.00	4.00e-12	62.40
IUUC-Laf-054589	Loxodonta africana	96.69	5.00e-146	510.00
IUUC-Meu-056459	Macropus eugenii	93.95	5.00e-105	374.00
IUUC-Mtr-058239	Medicago truncatula	33.59	4.00e-47	181.00
IUUC-Mmr-060819	Microcebus murinus	97.25	8.00e-168	582.00
IUUC-Mdo-062742	Monodelphis domestica	85.27	1.00e-143	502.00
IUUC-Mmu-063929	Mus musculus	94.49	2.00e-163	568.00
IUUC-Mac-065180	Musa acuminata	34.53	9.00e-44	171.00
IUUC-Mpu-066684	Mustela putorius furo	96.97	2.00e-156	545.00
IUUC-Mlu-067787	Myotis lucifugus	94.77	5.00e-151	527.00
IUUC-Nle-069846	Nomascus leucogenys	88.01	3.00e-135	474.00
IUUC-Ont-072271	Oreochromis niloticus	56.46	5.00e-89	321.00
IUUC-Oan-073572	Ornithorhynchus anatinus	78.86	8.00e-131	459.00
IUUC-Ocu-074968	Oryctolagus cuniculus	95.62	1.00e-104	374.00
IUUC-Oba-074972	Oryza barthii	34.48	3.00e-46	178.00
IUUC-Obr-076660	Oryza brachyantha	35.04	2.00e-45	176.00
IUUC-Ogl-077067	Oryza glaberrima	34.44	2.00e-49	189.00
IUUC-Ogu-078883	Oryza glumaepatula	38.71	3.00e-32	132.00
IUUC-Oin-079817	Oryza indica	38.71	4.00e-32	132.00
IUUC-Olo-080559	Oryza longistaminata	33.42	2.00e-46	179.00
IUUC-Ome-081866	Oryza meridionalis	38.71	2.00e-32	132.00
IUUC-Oni-082812	Oryza nivara	34.48	4.00e-46	178.00
IUUC-Opu-083756	Oryza punctata	39.44	5.00e-34	138.00
IUUC-Oru-084816	Oryza rufipogon	38.71	4.00e-32	132.00
IUUC-Osa-086112	Oryza sativa	38.71	4.00e-32	132.00
IUUC-Oga-089075	Otolemur garnettii	96.69	1.00e-148	519.00
IUUC-Oar-090387	Ovis aries	95.59	7.00e-145	506.00
IUUC-Ptr-090912	Pan troglodytes	96.14	1.00e-145	509.00
IUUC-Pan-092140	Papio anubis	100.00	5.00e-157	546.00
IUUC-Psi-093347	Pelodiscus sinensis	86.46	6.00e-61	227.00
IUUC-Pno-095064	Phaeosphaeria nodorum	36.82	6.00e-18	85.10
IUUC-Ppa-095654	Physcomitrella patens	40.00	2.00e-35	142.00
IUUC-Pfo-096607	Poecilia formosa	59.29	6.00e-96	344.00
IUUC-Pab-097738	Pongo abelii	95.87	6.00e-150	523.00
IUUC-Pop-099416	Populus trichocarpa	32.74	4.00e-45	175.00
IUUC-Pca-100348	Procavia capensis	94.23	4.00e-145	507.00
IUUC-Ppe-101522	Prunus persica	34.76	1.00e-49	190.00
IUUC-Pva-102412	Pteropus vampyrus	96.69	4.00e-155	540.00
IUUC-Pgr-103618	Puccinia graminis	37.31	6.00e-25	108.00
IUUC-Rno-105569	Rattus norvegicus	94.77	2.00e-149	521.00
IUUC-Sha-106918	Sarcophilus harrisii	86.01	9.00e-130	456.00
IUUC-Sja-107851	Schizosaccharomyces japonicus	40.42	3.00e-33	135.00
IUUC-Smo-109129	Selaginella moellendorffii	38.65	3.00e-32	132.00
IUUC-Sit-109813	Setaria italica	35.68	7.00e-47	181.00
IUUC-Sly-111899	Solanum lycopersicum	36.93	1.00e-53	203.00
IUUC-Stu-112027	Solanum tuberosum	35.01	2.00e-53	203.00
IUUC-Sbi-114459	Sorghum bicolor	32.81	6.00e-45	174.00
IUUC-Ssc-115460	Sus scrofa	96.42	1.00e-153	535.00
IUUC-Tsy-119385	Tarsius syrichta	81.25	3.00e-71	261.00
IUUC-Tni-120493	Tetraodon nigroviridis	59.89	3.00e-94	338.00
IUUC-Tca-121594	Theobroma cacao	36.29	7.00e-51	194.00
IUUC-Tre-121911	Trichoderma reesei	33.58	7.00e-28	117.00
IUUC-Tur-126610	Triticum urartu	38.11	9.00e-33	135.00
IUUC-Tme-127092	Tuber melanosporum	36.06	5.00e-26	112.00
IUUC-Tbe-127603	Tupaia belangeri	84.67	4.00e-55	208.00
IUUC-Ttr-129232	Tursiops truncatus	86.78	6.00e-145	506.00
IUUC-Vda-129946	Verticillium dahliae	33.33	7.00e-21	94.70
IUUC-Xma-133647	Xiphophorus maculatus	63.90	2.00e-93	335.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence