iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007568

UUCD1 version

UUC-ArT-00392

Ensembl Protein ID

AT5G38070.1

UniProt Accession

Q9LS14; Q9LS14_ARATH

Genbank Protein ID

AAY27056.1; AAZ14071.1; ABK59693.1; AED94264.1; BAA97540.1

Protein Name

At5g38070; RING/FYVE/PHD zinc finger superfamily protein; Similarity to unknown protein

Genbank Nucleotide ID

BT022069; DQ086847; BT029464; CP002688; AB028606

Gene Name

At5g38070; F16F17.8; F16F17_8

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G38070	AT5G38070.1	AT5G38070.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	16339806

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	0.16	13.4	54	100

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHv....f.hadClqkwpglknssskefrCPlCr 46
           C iC+++ +d  + +pC       f h++C+q+w    +++++   C +Cr
   Q: 54   CRICHDEDEDTNMDTPCSCSgtlkFaHHNCVQRW----CNEKGDTVCEICR 100
           ******99886666888765677777********....99**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MGDHLVLVVD RLSSDSGLGT VNRADPKADS VNEDGVSESI SAGADLCESK FVQCRICHDE 60
DEDTNMDTPC SCSGTLKFAH HNCVQRWCNE KGDTVCEICR QQYKPGYTAP RQLFHYTGIS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCTTCTTTGT TTATTGTTCA TATTCTGATA TTGTTGTTGC TGGTTGATTT TTCTGACATT 60
TGGTTTCTAA CTTTCTATAT ATCATTGGAG TTTTTCTTGG CGAGAGTTAG GATGGGAGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR022143--DUF3675
IPR033275--MARCH-like
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51292--ZF_RING_CH

Pfam

PF12428--DUF3675
PF12906--RINGv

SMART

SM00744--RINGv

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

KEGG

ath:AT5G38070

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000992	Aegilops tauschii	36.59	6.00e-25	107.00
IUUC-Aly-005679	Arabidopsis lyrata	91.89	5.00e-123	432.00
IUUC-Ame-010820	Astyanax mexicanus	30.86	4.00e-10	58.20
IUUC-Bol-015796	Brassica oleracea	76.83	3.00e-101	360.00
IUUC-Bra-016883	Brassica rapa	79.74	9.00e-87	311.00
IUUC-Cre-022732	Chlamydomonas reinhardtii	58.62	3.00e-18	82.80
IUUC-Dre-027921	Danio rerio	30.61	2.00e-10	59.70
IUUC-Gac-042285	Gasterosteus aculeatus	27.43	9.00e-11	60.50
IUUC-Gma-043460	Glycine max	44.67	7.00e-51	193.00
IUUC-Hvu-047417	Hordeum vulgare	35.22	3.00e-31	127.00
IUUC-Mtr-057809	Medicago truncatula	44.40	5.00e-53	200.00
IUUC-Oba-075206	Oryza barthii	35.47	1.00e-36	145.00
IUUC-Ogl-077791	Oryza glaberrima	35.47	1.00e-36	145.00
IUUC-Oni-082903	Oryza nivara	35.47	2.00e-36	144.00
IUUC-Opu-084009	Oryza punctata	33.47	8.00e-36	142.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence