iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113769

UUCD1 version

UUC-SoB-01540

Ensembl Protein ID

Sb01g007730.1

UniProt Accession

Q8LKU8; Q8LKU8_SORBI

Genbank Protein ID

AAM47578.1; KXG37531.1

Protein Name

Putative cleavage stimulation factor subunit 1

Genbank Nucleotide ID

AF503433; CM000760

Gene Name

170F8.2; SORBI_001G085800

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g007730	Sb01g007730.1	Sb01g007730.1
Sb01g007730	Sb01g007730.2	Sb01g007730.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.70e-28	97.6	171	201
UBD/Beta-Prp	4.40e-52	177.9	113	420

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           Ht  +++l+f ++ ++l+s++ D+tik +D+
   Q: 171  HTQAINDLDFhPEsPILISAAKDNTIKFFDF 201
           9**********888****************6 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatgsrdgtikvwdvttgkl..............lrslsgheaevtavkfspdgkilvtgseDrtikvwdls...tgk 85
           ++hk+  +c kfspd++++atgs+d +ik ++v + k               +r++++h++++++++f+p+++il+++++D+tik +d+s   ++k
   Q: 113  SDHKNAARCAKFSPDGKYFATGSADTSIKFFEVAKIKQtmvgdskdgparpvIRTFYDHTQAINDLDFHPESPILISAAKDNTIKFFDFSktnARK 208
           6899999****************************9999************************************************999555677 PP
   S: 86   cvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqclee.tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgght 180
            +++++  +++v+s+ f+p gd+l++G+++ +++++d++t +c+ +   +  ++ +n v+++++g+l+v++s+D+ +r+Wd  +++++r   g+h 
   Q: 209  AFRVIQ-DTHNVRSVCFHPCGDYLLAGTDHPVAHLYDINTFTCYLSaNAQDSSSPINQVRYSCTGSLYVTASKDGSLRIWDGVSAECVRPIIGAHG 303
           777777.**************************************94455566789***********************************99887 PP
   S: 181  ds.vyslsfdsngkelvsgsldgtvklwdlqtgecvrtlng.htdnvksvrfs.pnderlvsgs.sDgsiriWdlrsgdllktlqlhnssvisvav 272
           ++  +s +f+++ ++++s+++d+ vklw++ tg+ v+++ g  ++++++ +++ + +e+++s+  + + + +Wd  + + +  l     s  +   
   Q: 304  SAeATSAIFTRDERYVLSCGKDSCVKLWEVGTGRLVKQYAGaIRRQFRCQAVFnETEEFVLSVDeQNNEVVVWDALTAEKVARLPS--GSTGAPRW 397
           65156777*******************************996466666666663777777777767788999*9777666666555..44444444 PP
   S: 273  ..lsfgdnvlvlgsedskvniwk 293
             +s+ ++v+v +++d ++++wk
   Q: 398  ldHSPVEPVFVICGNDRSIRFWK 420
           346777****************9 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MNEAVQEAKL LRQVNALIVA HLRSQNLGQA AAAVAAATMT PISAAESVPA NQLLRLVAKG 60
LAAEGGGGAA SAFDSAGFGG AVQPLGSSAV DFSMQDVKGS SKSFPKHEAK HVSDHKNAAR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAACGAGG CGGTGCAGGA GGCGAAGCTG CTGCGGCAGG TGAACGCGCT CATCGTGGCG 60
CACCTCCGTA GCCAGAACCT CGGGCAGGCC GCAGCCGCCG TCGCCGCCGC CACCATGACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002163	Ailuropoda melanoleuca	40.36	1.00e-79	289.00
IUUC-Atr-002687	Amborella trichopoda	57.37	2.00e-151	527.00
IUUC-Apl-003438	Anas platyrhynchos	40.36	2.00e-80	291.00
IUUC-Aca-005178	Anolis carolinensis	40.10	4.00e-80	290.00
IUUC-Aly-005791	Arabidopsis lyrata	61.07	4.00e-151	526.00
IUUC-Ath-006689	Arabidopsis thaliana	61.92	3.00e-152	530.00
IUUC-Ame-011217	Astyanax mexicanus	44.60	6.00e-69	253.00
IUUC-Bta-012619	Bos taurus	40.36	1.00e-79	289.00
IUUC-Bdi-014515	Brachypodium distachyon	79.77	0.00e+00	648.00
IUUC-Bra-017450	Brassica rapa	56.55	2.00e-140	491.00
IUUC-Cel-018151	Caenorhabditis elegans	38.76	3.00e-69	254.00
IUUC-Cja-019304	Callithrix jacchus	40.36	5.00e-80	290.00
IUUC-Cfa-020208	Canis familiaris	40.36	1.00e-79	289.00
IUUC-Cpo-022245	Cavia porcellus	40.36	1.00e-79	289.00
IUUC-Csa-023066	Chlorocebus sabaeus	40.36	5.00e-80	290.00
IUUC-Cho-024770	Choloepus hoffmanni	43.03	2.00e-79	288.00
IUUC-Cin-025621	Ciona intestinalis	38.92	6.00e-68	250.00
IUUC-Csv-026071	Ciona savignyi	41.88	9.00e-77	279.00
IUUC-Dre-028254	Danio rerio	42.43	2.00e-77	281.00
IUUC-Dno-029903	Dasypus novemcinctus	40.36	1.00e-79	289.00
IUUC-Dor-030423	Dipodomys ordii	40.36	1.00e-79	289.00
IUUC-Dme-031993	Drosophila melanogaster	40.81	2.00e-69	255.00
IUUC-Eca-033316	Equus caballus	40.36	1.00e-79	289.00
IUUC-Eeu-035001	Erinaceus europaeus	43.03	1.00e-78	286.00
IUUC-Fca-036447	Felis catus	40.36	1.00e-79	289.00
IUUC-Fal-037601	Ficedula albicollis	40.36	2.00e-80	291.00
IUUC-Gmo-038531	Gadus morhua	41.42	1.00e-73	269.00
IUUC-Gga-040869	Gallus gallus	40.36	4.00e-80	290.00
IUUC-Gac-042380	Gasterosteus aculeatus	43.07	1.00e-77	282.00
IUUC-Gma-043478	Glycine max	66.75	5.00e-167	579.00
IUUC-Ggo-045302	Gorilla gorilla	40.36	5.00e-80	290.00
IUUC-Hsa-045678	Homo sapiens	40.36	5.00e-80	290.00
IUUC-Hvu-047301	Hordeum vulgare	81.88	0.00e+00	677.00
IUUC-Itr-048259	Ictidomys tridecemlineatus	40.36	1.00e-79	289.00
IUUC-Lch-050319	Latimeria chalumnae	43.03	7.00e-80	290.00
IUUC-Lpe-051440	Leersia perrieri	65.75	3.00e-175	607.00
IUUC-Loc-052035	Lepisosteus oculatus	43.62	3.00e-80	291.00
IUUC-Laf-054275	Loxodonta africana	40.36	1.00e-79	289.00
IUUC-Mcc-055857	Macaca mulatta	36.36	1.00e-59	222.00
IUUC-Mtr-058667	Medicago truncatula	64.40	9.00e-155	538.00
IUUC-Mga-059710	Meleagris gallopavo	40.36	4.00e-80	290.00
IUUC-Mmr-060604	Microcebus murinus	40.36	1.00e-79	289.00
IUUC-Mdo-062953	Monodelphis domestica	40.36	9.00e-80	289.00
IUUC-Mmu-064292	Mus musculus	40.10	1.00e-79	289.00
IUUC-Mac-064568	Musa acuminata	73.80	3.00e-155	540.00
IUUC-Mpu-066294	Mustela putorius furo	44.91	3.00e-52	197.00
IUUC-Mlu-067279	Myotis lucifugus	40.78	3.00e-82	297.00
IUUC-Nle-069322	Nomascus leucogenys	40.36	5.00e-80	290.00
IUUC-Opr-070580	Ochotona princeps	40.36	1.00e-79	289.00
IUUC-Ont-072554	Oreochromis niloticus	43.62	7.00e-80	290.00
IUUC-Oan-072856	Ornithorhynchus anatinus	40.62	3.00e-80	291.00
IUUC-Ocu-074150	Oryctolagus cuniculus	40.20	4.00e-63	234.00
IUUC-Oba-075585	Oryza barthii	73.97	0.00e+00	643.00
IUUC-Obr-076069	Oryza brachyantha	79.95	0.00e+00	650.00
IUUC-Ogl-077045	Oryza glaberrima	81.80	0.00e+00	702.00
IUUC-Ogu-078697	Oryza glumaepatula	81.28	0.00e+00	674.00
IUUC-Oin-080119	Oryza indica	81.80	0.00e+00	702.00
IUUC-Olo-081093	Oryza longistaminata	65.82	4.00e-115	409.00
IUUC-Ome-081718	Oryza meridionalis	70.97	1.00e-165	575.00
IUUC-Oni-082072	Oryza nivara	73.97	0.00e+00	643.00
IUUC-Opu-084080	Oryza punctata	70.60	8.00e-161	558.00
IUUC-Oru-085070	Oryza rufipogon	76.59	0.00e+00	645.00
IUUC-Osa-086149	Oryza sativa	81.80	0.00e+00	702.00
IUUC-Ola-086697	Oryzias latipes	43.32	4.00e-79	287.00
IUUC-Oga-088697	Otolemur garnettii	40.36	1.00e-79	289.00
IUUC-Oar-089774	Ovis aries	40.36	1.00e-79	289.00
IUUC-Ptr-090924	Pan troglodytes	40.36	5.00e-80	290.00
IUUC-Pan-092373	Papio anubis	40.36	5.00e-80	290.00
IUUC-Psi-094001	Pelodiscus sinensis	40.36	7.00e-80	290.00
IUUC-Pma-094274	Petromyzon marinus	40.71	2.00e-73	269.00
IUUC-Ppa-095562	Physcomitrella patens	62.68	2.00e-152	531.00
IUUC-Pfo-097235	Poecilia formosa	43.32	3.00e-79	288.00
IUUC-Pab-098608	Pongo abelii	40.36	5.00e-80	290.00
IUUC-Pca-100268	Procavia capensis	40.36	1.00e-79	289.00
IUUC-Ppe-101425	Prunus persica	65.75	5.00e-162	563.00
IUUC-Pva-103183	Pteropus vampyrus	40.36	1.00e-79	289.00
IUUC-Rno-105097	Rattus norvegicus	40.10	1.00e-79	289.00
IUUC-Sha-107642	Sarcophilus harrisii	40.36	9.00e-80	289.00
IUUC-Smo-108680	Selaginella moellendorffii	59.53	3.00e-135	473.00
IUUC-Sit-110471	Setaria italica	90.31	0.00e+00	757.00
IUUC-Sly-111143	Solanum lycopersicum	59.84	2.00e-73	267.00
IUUC-Stu-111926	Solanum tuberosum	72.61	3.00e-67	246.00
IUUC-Sar-112947	Sorex araneus	43.58	2.00e-62	231.00
IUUC-Ssc-115736	Sus scrofa	40.36	1.00e-79	289.00
IUUC-Tgu-117457	Taeniopygia guttata	40.36	2.00e-80	291.00
IUUC-Tru-117760	Takifugu rubripes	43.92	4.00e-80	290.00
IUUC-Tsy-118943	Tarsius syrichta	40.10	2.00e-76	278.00
IUUC-Tni-120081	Tetraodon nigroviridis	43.92	4.00e-80	290.00
IUUC-Tca-121190	Theobroma cacao	67.21	2.00e-167	581.00
IUUC-Tae-123709	Triticum aestivum	81.67	0.00e+00	658.00
IUUC-Tur-126329	Triticum urartu	83.78	7.00e-179	619.00
IUUC-Tbe-127878	Tupaia belangeri	40.10	2.00e-78	285.00
IUUC-Ttr-128985	Tursiops truncatus	40.36	1.00e-79	289.00
IUUC-Vpa-130147	Vicugna pacos	40.36	1.00e-79	289.00
IUUC-Vvi-130935	Vitis vinifera	66.82	8.00e-168	582.00
IUUC-Xtr-132482	Xenopus tropicalis	40.36	5.00e-80	290.00
IUUC-Xma-133929	Xiphophorus maculatus	43.32	3.00e-79	288.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence