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Tag Content
iUUCD ID IUUC-Aly-005945
Ensembl Protein ID fgenesh2_kg.4__2098__AT2G39990.1
UniProt Accession D7LDU9; D7LDU9_ARALL
Genbank Protein ID EFH38628.1; EFH57948.1
Protein Name Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon
Genbank Nucleotide ID GL349109; GL348716
Gene Name ARALYDRAFT_483038; ARALYDRAFT_497488
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
fgenesh2_kg.4__2098__AT2G39990.1 fgenesh2_kg.4__2098__AT2G39990.1 fgenesh2_kg.4__2098__AT2G39990.1
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
DUB/JAMM 38.78 1.00e-48 191.00 IUUC-Hsa-046860
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis lyrata
Functional Description
(View)

Functional Description


     Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
 Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
Protein Sequence
(Fasta)
MAAASEHTVL QFVAPSSTAT ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI 60
LPDGTVDIRN SYAVPHNEFS DQVAVDIDYH HNMLASHLKV NPKEIIVGWY STGAGVNGGS 120
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Protein Fasta Sequence


>IUUC-Aly-005945|DUB,JAMM|Arabidopsis lyrata
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Nucleotide Sequence
(Fasta)
TCCTCTAACG CTCACATCGG AAACCCTAAA TCTCCACTCT CTTTTACCCG TTCTCAGAAT 60
CTTAACCATG GCGGCGGCGA GCGAGCACAC CGTCTTGCAA TTCGTGGCTC CTTCATCAAC 120
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Nucleotide Fasta Sequence


>IUUC-Aly-005945|DUB,JAMM|Arabidopsis lyrata
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Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0647--Proteasome
KW-0648--Protein biosynthesis
KW-1185--Reference proteome
Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C
Pfam

PF01398--JAB
PF13012--MitMem_reg
SMART

SM00232--JAB_MPN
Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0000502--C:proteasome complex
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation
KEGG aly:ARALYDRAFT_483038; aly:ARALYDRAFT_497488
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001150 Aegilops tauschii 65.07 5.00e-97 347.00
IUUC-Aml-001527 Ailuropoda melanoleuca 38.78 4.00e-52 197.00
IUUC-Atr-002686 Amborella trichopoda 71.38 3.00e-109 387.00
IUUC-Apl-003977 Anas platyrhynchos 38.18 3.00e-41 160.00
IUUC-Aca-004335 Anolis carolinensis 39.92 1.00e-54 206.00
IUUC-Ath-007045 Arabidopsis thaliana 94.54 9.00e-144 501.00
IUUC-Acl-008365 Aspergillus clavatus 37.37 7.00e-41 160.00
IUUC-Afl-008742 Aspergillus flavus 37.01 8.00e-41 160.00
IUUC-Afu-009030 Aspergillus fumigatus 37.37 1.00e-41 163.00
IUUC-Ani-009212 Aspergillus nidulans 37.37 4.00e-41 160.00
IUUC-Ang-009712 Aspergillus niger 36.77 1.00e-40 159.00
IUUC-Aor-009885 Aspergillus oryzae 37.37 5.00e-42 164.00
IUUC-Ate-010315 Aspergillus terreus 36.65 8.00e-40 156.00
IUUC-Ame-010801 Astyanax mexicanus 48.15 2.00e-19 88.60
IUUC-Bgr-011982 Blumeria graminis 35.79 6.00e-40 157.00
IUUC-Bta-012804 Bos taurus 38.78 4.00e-52 197.00
IUUC-Bci-013891 Botrytis cinerea 34.69 3.00e-33 135.00
IUUC-Bdi-014328 Brachypodium distachyon 66.67 3.00e-96 343.00
IUUC-Bol-015446 Brassica oleracea 92.83 6.00e-151 525.00
IUUC-Bra-016862 Brassica rapa 92.49 1.00e-150 524.00
IUUC-Cel-018171 Caenorhabditis elegans 27.65 1.00e-23 102.00
IUUC-Cja-019335 Callithrix jacchus 38.78 5.00e-52 197.00
IUUC-Cfa-020138 Canis familiaris 38.40 1.00e-51 196.00
IUUC-Cpo-022109 Cavia porcellus 36.53 4.00e-42 164.00
IUUC-Cre-022664 Chlamydomonas reinhardtii 40.79 8.00e-56 209.00
IUUC-Csa-023994 Chlorocebus sabaeus 38.78 6.00e-52 197.00
IUUC-Cho-024351 Choloepus hoffmanni 34.98 3.00e-31 128.00
IUUC-Cin-025801 Ciona intestinalis 35.29 1.00e-47 182.00
IUUC-Csv-025805 Ciona savignyi 36.81 1.00e-47 182.00
IUUC-Cgl-026643 Colletotrichum gloeosporioides 33.22 8.00e-35 140.00
IUUC-Cne-026868 Cryptococcus neoformans 34.07 5.00e-26 110.00
IUUC-Cme-027328 Cyanidioschyzon merolae 27.27 2.00e-19 89.40
IUUC-Dre-028085 Danio rerio 39.16 1.00e-52 199.00
IUUC-Dno-030099 Dasypus novemcinctus 38.78 6.00e-52 197.00
IUUC-Dor-030324 Dipodomys ordii 35.36 4.00e-42 164.00
IUUC-Dse-031314 Dothistroma septosporum 36.73 3.00e-41 161.00
IUUC-Dme-031926 Drosophila melanogaster 38.52 9.00e-48 182.00
IUUC-Ete-032569 Echinops telfairi 37.26 4.00e-48 183.00
IUUC-Eca-033502 Equus caballus 36.50 3.00e-46 178.00
IUUC-Eeu-034883 Erinaceus europaeus 31.32 2.00e-19 88.20
IUUC-Fca-035873 Felis catus 38.78 4.00e-52 197.00
IUUC-Fal-036921 Ficedula albicollis 39.54 3.00e-53 201.00
IUUC-Fox-037765 Fusarium oxysporum 30.32 3.00e-27 115.00
IUUC-Fso-038240 Fusarium solani 31.07 2.00e-28 118.00
IUUC-Gmo-038864 Gadus morhua 38.40 1.00e-52 198.00
IUUC-Ggr-039862 Gaeumannomyces graminis 31.53 2.00e-27 116.00
IUUC-Gga-040952 Gallus gallus 39.54 4.00e-53 201.00
IUUC-Gac-041677 Gasterosteus aculeatus 39.25 3.00e-55 207.00
IUUC-Gma-043061 Glycine max 78.01 2.00e-117 414.00
IUUC-Ggo-045591 Gorilla gorilla 38.78 4.00e-52 197.00
IUUC-Hsa-046860 Homo sapiens 38.78 6.00e-52 197.00
IUUC-Hvu-047410 Hordeum vulgare 70.27 1.00e-53 200.00
IUUC-Itr-048211 Ictidomys tridecemlineatus 39.16 1.00e-52 199.00
IUUC-Lch-049410 Latimeria chalumnae 50.00 4.00e-35 140.00
IUUC-Lpe-051102 Leersia perrieri 67.58 9.00e-103 365.00
IUUC-Loc-052016 Lepisosteus oculatus 36.47 4.00e-41 160.00
IUUC-Lma-053157 Leptosphaeria maculans 35.11 2.00e-40 159.00
IUUC-Laf-054568 Loxodonta africana 38.78 9.00e-52 196.00
IUUC-Mcc-054613 Macaca mulatta 38.78 4.00e-52 197.00
IUUC-Meu-056832 Macropus eugenii 23.19 7.00e-12 63.20
IUUC-Mor-057104 Magnaporthe oryzae 30.51 3.00e-28 118.00
IUUC-Mtr-058445 Medicago truncatula 76.98 8.00e-126 442.00
IUUC-Mla-059038 Melampsora laricipopulina 31.96 1.00e-29 123.00
IUUC-Mga-059548 Meleagris gallopavo 38.33 1.00e-43 169.00
IUUC-Mvi-060520 Microbotryum violaceum 28.69 3.00e-17 82.00
IUUC-Mdo-062376 Monodelphis domestica 38.40 3.00e-52 198.00
IUUC-Mmu-063254 Mus musculus 38.78 3.00e-52 198.00
IUUC-Mac-065635 Musa acuminata 63.55 5.00e-101 359.00
IUUC-Mpu-066314 Mustela putorius furo 38.78 3.00e-52 197.00
IUUC-Mlu-067512 Myotis lucifugus 38.40 1.00e-52 199.00
IUUC-Nfi-068262 Neosartorya fischeri 37.37 1.00e-41 163.00
IUUC-Ncr-068872 Neurospora crassa 32.98 2.00e-29 122.00
IUUC-Nle-070118 Nomascus leucogenys 38.78 4.00e-52 197.00
IUUC-Opr-071228 Ochotona princeps 38.33 9.00e-44 169.00
IUUC-Ont-072600 Oreochromis niloticus 38.40 5.00e-54 203.00
IUUC-Oan-073584 Ornithorhynchus anatinus 37.44 5.00e-44 170.00
IUUC-Ocu-074542 Oryctolagus cuniculus 38.78 1.00e-52 199.00
IUUC-Oba-075923 Oryza barthii 69.76 2.00e-106 378.00
IUUC-Obr-076313 Oryza brachyantha 73.26 3.00e-101 360.00
IUUC-Ogl-076932 Oryza glaberrima 69.76 2.00e-106 378.00
IUUC-Ogu-078152 Oryza glumaepatula 69.76 2.00e-106 378.00
IUUC-Oin-079528 Oryza indica 69.76 2.00e-106 378.00
IUUC-Olo-080401 Oryza longistaminata 69.76 2.00e-106 378.00
IUUC-Ome-081553 Oryza meridionalis 69.42 4.00e-106 377.00
IUUC-Oni-082090 Oryza nivara 70.10 1.00e-106 378.00
IUUC-Opu-083583 Oryza punctata 74.03 2.00e-102 364.00
IUUC-Oru-084492 Oryza rufipogon 69.76 2.00e-106 378.00
IUUC-Osa-085383 Oryza sativa 69.76 2.00e-106 378.00
IUUC-Ola-086835 Oryzias latipes 38.78 5.00e-55 206.00
IUUC-Olu-087716 Ostreococcus lucimarinus 37.50 6.00e-39 153.00
IUUC-Oga-088886 Otolemur garnettii 38.40 5.00e-52 197.00
IUUC-Oar-090079 Ovis aries 38.78 2.00e-52 198.00
IUUC-Ptr-091457 Pan troglodytes 38.78 6.00e-52 197.00
IUUC-Pan-092317 Papio anubis 35.71 1.00e-27 115.00
IUUC-Psi-093129 Pelodiscus sinensis 36.47 5.00e-45 174.00
IUUC-Pma-094488 Petromyzon marinus 41.73 5.00e-55 207.00
IUUC-Pno-095049 Phaeosphaeria nodorum 35.09 1.00e-41 162.00
IUUC-Ppa-095341 Physcomitrella patens 61.57 8.00e-95 339.00
IUUC-Pfo-096286 Poecilia formosa 38.40 8.00e-54 202.00
IUUC-Pab-097765 Pongo abelii 38.78 6.00e-52 197.00
IUUC-Pop-099131 Populus trichocarpa 79.52 5.00e-125 439.00
IUUC-Pca-100524 Procavia capensis 31.42 4.00e-28 117.00
IUUC-Ppe-101934 Prunus persica 78.01 1.00e-125 441.00
IUUC-Pva-102577 Pteropus vampyrus 38.78 1.00e-52 199.00
IUUC-Pgr-103521 Puccinia graminis 33.46 5.00e-32 130.00
IUUC-Pte-104304 Pyrenophora teres 35.79 1.00e-42 166.00
IUUC-Pyt-104563 Pyrenophora triticirepentis 35.79 1.00e-42 166.00
IUUC-Rno-105717 Rattus norvegicus 39.16 7.00e-53 200.00
IUUC-Sha-107190 Sarcophilus harrisii 37.84 3.00e-49 188.00
IUUC-Sja-107918 Schizosaccharomyces japonicus 34.66 4.00e-34 137.00
IUUC-Spo-108355 Schizosaccharomyces pombe 34.75 5.00e-38 150.00
IUUC-Smo-109374 Selaginella moellendorffii 61.85 9.00e-98 348.00
IUUC-Sit-110119 Setaria italica 72.08 2.00e-104 370.00
IUUC-Sly-111570 Solanum lycopersicum 74.23 6.00e-112 395.00
IUUC-Stu-112308 Solanum tuberosum 74.91 6.00e-119 419.00
IUUC-Sar-113515 Sorex araneus 40.00 1.00e-16 79.00
IUUC-Sbi-114605 Sorghum bicolor 73.21 1.00e-104 372.00
IUUC-Sre-114906 Sporisorium reilianum 33.20 3.00e-38 151.00
IUUC-Tgu-117087 Taeniopygia guttata 38.77 1.00e-43 168.00
IUUC-Tru-117700 Takifugu rubripes 39.92 3.00e-56 211.00
IUUC-Tni-120470 Tetraodon nigroviridis 38.40 3.00e-54 204.00
IUUC-Tca-121109 Theobroma cacao 79.73 6.00e-121 426.00
IUUC-Tre-122095 Trichoderma reesei 32.03 1.00e-26 112.00
IUUC-Tvi-122580 Trichoderma virens 32.03 2.00e-26 112.00
IUUC-Tae-125129 Triticum aestivum 71.43 8.00e-103 365.00
IUUC-Tur-126658 Triticum urartu 64.71 2.00e-92 331.00
IUUC-Tme-127043 Tuber melanosporum 37.68 6.00e-42 164.00
IUUC-Tbe-127927 Tupaia belangeri 38.78 4.00e-52 197.00
IUUC-Ttr-129231 Tursiops truncatus 38.78 1.00e-52 199.00
IUUC-Uma-129578 Ustilago maydis 32.86 3.00e-37 147.00
IUUC-Vda-129730 Verticillium dahliae 31.82 2.00e-33 135.00
IUUC-Vvi-130968 Vitis vinifera 80.00 4.00e-126 443.00
IUUC-Xtr-132203 Xenopus tropicalis 38.02 1.00e-50 192.00
IUUC-Xma-133972 Xiphophorus maculatus 38.40 8.00e-54 202.00
IUUC-Yli-134553 Yarrowia lipolytica 31.58 5.00e-28 117.00
IUUC-Zma-134941 Zea mays 71.70 9.00e-95 338.00
Created Date 25-Jun-2017

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