iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111894

Ensembl Protein ID

Solyc03g113870.1.1

UniProt Accession

K4BKN9; K4BKN9_SOLLC

Protein Name

RING-type E3 ubiquitin transferase

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc03g113870.1	Solyc03g113870.1.1	Solyc03g113870.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	8.00e-15	55.4	38	109

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +p+e++CpI + lM dPvv+++G++++r+s++ + + g k    ++   + ++++Pnl+lr +i  wce+++
   Q: 38   PPKELICPIYGCLMFDPVVVSTGQSFERTSVQVCKDLGFKPQLPDGLNPDFTNVIPNLALRTTILTWCEKSG 109
           79**************************************9999999999*******************986 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MYSPFRKANG DTGRHGRSKS VWNIFVYRSS SKFDKRDPPK ELICPIYGCL MFDPVVVSTG 60
QSFERTSVQV CKDLGFKPQL PDGLNPDFTN VIPNLALRTT ILTWCEKSGA EKPQQPDYYV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTATTCCC CTTTCAGAAA AGCTAATGGG GATACAGGTA GACATGGCAG AAGCAAATCC 60
GTCTGGAATA TCTTTGTTTA CAGGTCATCT TCTAAATTTG ATAAAAGGGA TCCTCCAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005887	Arabidopsis lyrata	49.25	6.00e-125	440.00
IUUC-Ath-007165	Arabidopsis thaliana	50.69	2.00e-123	435.00
IUUC-Bol-015998	Brassica oleracea	48.63	8.00e-107	380.00
IUUC-Bra-017987	Brassica rapa	48.79	9.00e-111	393.00
IUUC-Mtr-057660	Medicago truncatula	55.38	6.00e-124	436.00
IUUC-Pop-099467	Populus trichocarpa	53.42	1.00e-131	462.00
IUUC-Stu-112202	Solanum tuberosum	90.67	0.00e+00	777.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence