iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007131

UUCD1 version

UUC-ArT-00480

Ensembl Protein ID

AT5G05810.1

UniProt Accession

Q5EAE9; F4K0U7; Q9FFJ7; ATL43_ARATH

Genbank Protein ID

BAB09675.1; AED90928.2; AAW81728.1; AAX49381.1

Protein Name

RING-H2 finger protein ATL43; RING-type E3 ubiquitin transferase ATL43

Genbank Nucleotide ID

AB005237; CP002688; BT020620; BT021932

Gene Name

ATL43; At5g05810; MJJ3.23

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G05810	AT5G05810.1	AT5G05810.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	4.90e-07	31.0	146	188

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl +f   + +++lp C+H+fh +C+  w         + +CPlCr
   Q: 146  CAVCLARFepTEVLRLLPkCKHAFHVECVDTW------LDAHSTCPLCR 188
           ********5544477777**************......**********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MSSSSLILLF STLSLFLNVS LADNHTAVVI TTSDTPPPLP PPSPPPRHNF TSSLMPGIAV 60
VIAVLTAFFS LTFLLLLYVK HCKRRNGSVY VNHPQRFAIT RYGGGYYNGG GVVGGRKNSG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAATTTGTAA GGCATGAAAG ATGAAAGAAG GGAGTCATGT TTTTAATGCA TCCTCTTTGT 60
CCTCATTCAC TTTGTTTTCT TTCCCTTTTA TAAAAACCTC TCTCCCTATC TCACACACTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0732--Signal
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT5G05810

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003122	Amborella trichopoda	43.95	6.00e-54	204.00
IUUC-Aly-006151	Arabidopsis lyrata	95.18	1.00e-173	601.00
IUUC-Bdi-014982	Brachypodium distachyon	64.44	6.00e-40	157.00
IUUC-Bol-015760	Brassica oleracea	81.70	3.00e-131	460.00
IUUC-Bra-017357	Brassica rapa	77.58	3.00e-128	450.00
IUUC-Gma-042757	Glycine max	45.85	4.00e-59	221.00
IUUC-Hvu-047245	Hordeum vulgare	41.85	8.00e-47	180.00
IUUC-Lpe-051226	Leersia perrieri	62.96	6.00e-40	157.00
IUUC-Mtr-057973	Medicago truncatula	46.69	6.00e-60	223.00
IUUC-Mac-065494	Musa acuminata	43.36	2.00e-56	212.00
IUUC-Oba-075267	Oryza barthii	65.93	3.00e-40	158.00
IUUC-Ogl-077528	Oryza glaberrima	65.93	4.00e-40	158.00
IUUC-Ogu-078754	Oryza glumaepatula	65.93	3.00e-40	158.00
IUUC-Oin-079781	Oryza indica	65.93	4.00e-40	158.00
IUUC-Ome-081863	Oryza meridionalis	65.93	3.00e-40	158.00
IUUC-Oni-082943	Oryza nivara	65.93	4.00e-40	158.00
IUUC-Opu-083466	Oryza punctata	65.19	5.00e-40	157.00
IUUC-Oru-084675	Oryza rufipogon	65.93	4.00e-40	158.00
IUUC-Osa-085804	Oryza sativa	63.57	4.00e-40	158.00
IUUC-Ppa-095281	Physcomitrella patens	50.68	6.00e-32	131.00
IUUC-Pop-099148	Populus trichocarpa	46.37	1.00e-71	263.00
IUUC-Ppe-102095	Prunus persica	45.39	1.00e-69	256.00
IUUC-Smo-109603	Selaginella moellendorffii	77.36	2.00e-23	99.40
IUUC-Sit-109970	Setaria italica	44.03	2.00e-50	192.00
IUUC-Sly-111677	Solanum lycopersicum	44.57	2.00e-59	222.00
IUUC-Stu-112327	Solanum tuberosum	60.38	2.00e-45	176.00
IUUC-Sbi-114529	Sorghum bicolor	42.90	2.00e-50	192.00
IUUC-Tae-124580	Triticum aestivum	65.93	4.00e-39	154.00
IUUC-Vvi-131553	Vitis vinifera	52.81	3.00e-82	298.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence