iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-113974

UUCD1 version

UUC-SoB-00762

Ensembl Protein ID

Sb04g038540.1

UniProt Accession

C5XWT4; C5XWT4_SORBI

Genbank Protein ID

EES07827.1; KXG31436.1

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000763; CM000763

Gene Name

SORBI_004G358700

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g038540	Sb04g038540.1	Sb04g038540.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.20e-26	91.3	25	99

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggk.....tcPvtrqplteedlvPnltlrrliqawceens 73
           e+f+Cp+++++M+dPv++++G+t++r++I kw+++++      tcP+t+++l+++d+ P+++lr++i++w+++n+
   Q: 25   EAFMCPLTKQVMHDPVTIETGQTFEREAILKWFRECRDsgrkpTCPLTQAELRSTDISPSIALRNVIDEWRARNE 99
           89*******************************555555556******************************997 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MADFGGGDSE LEEQSNEGYQ EPAFEAFMCP LTKQVMHDPV TIETGQTFER EAILKWFREC 60
RDSGRKPTCP LTQAELRSTD ISPSIALRNV IDEWRARNED KELDKAFASL SLTTTQHAQD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGGATT TCGGTGGCGG CGACAGCGAG CTGGAGGAGC AATCCAATGA GGGGTACCAG 60
GAGCCGGCGT TCGAGGCCTT CATGTGCCCT CTCACCAAGC AGGTGATGCA CGACCCCGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR001263--PInositide-3_kin_accessory_dom
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_04g038540

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000956	Aegilops tauschii	73.32	0.00e+00	808.00
IUUC-Atr-002916	Amborella trichopoda	54.67	0.00e+00	811.00
IUUC-Aly-006004	Arabidopsis lyrata	52.93	0.00e+00	755.00
IUUC-Ath-007153	Arabidopsis thaliana	52.86	0.00e+00	756.00
IUUC-Bdi-014702	Brachypodium distachyon	74.14	0.00e+00	1129.00
IUUC-Bol-015955	Brassica oleracea	51.10	0.00e+00	708.00
IUUC-Bra-017058	Brassica rapa	50.73	0.00e+00	707.00
IUUC-Gma-044318	Glycine max	56.08	0.00e+00	879.00
IUUC-Hvu-047350	Hordeum vulgare	76.31	0.00e+00	1139.00
IUUC-Lch-049643	Latimeria chalumnae	29.67	2.00e-09	56.20
IUUC-Lpe-051625	Leersia perrieri	68.10	0.00e+00	1030.00
IUUC-Mtr-058511	Medicago truncatula	55.96	0.00e+00	871.00
IUUC-Mac-064911	Musa acuminata	52.67	0.00e+00	770.00
IUUC-Oba-075990	Oryza barthii	65.83	0.00e+00	992.00
IUUC-Obr-076196	Oryza brachyantha	68.32	0.00e+00	820.00
IUUC-Ogl-077850	Oryza glaberrima	69.31	0.00e+00	1039.00
IUUC-Ogu-078913	Oryza glumaepatula	67.01	0.00e+00	1021.00
IUUC-Oin-079057	Oryza indica	69.23	0.00e+00	1038.00
IUUC-Olo-080644	Oryza longistaminata	49.28	0.00e+00	713.00
IUUC-Ome-081744	Oryza meridionalis	68.67	0.00e+00	1033.00
IUUC-Oni-082927	Oryza nivara	67.01	0.00e+00	1021.00
IUUC-Opu-083417	Oryza punctata	69.04	0.00e+00	1032.00
IUUC-Oru-085059	Oryza rufipogon	67.01	0.00e+00	1021.00
IUUC-Osa-085409	Oryza sativa	69.23	0.00e+00	1038.00
IUUC-Ppa-096021	Physcomitrella patens	45.21	0.00e+00	630.00
IUUC-Pop-099966	Populus trichocarpa	56.20	0.00e+00	858.00
IUUC-Ppe-101973	Prunus persica	54.19	0.00e+00	841.00
IUUC-Smo-109219	Selaginella moellendorffii	44.70	2.00e-177	615.00
IUUC-Sit-110197	Setaria italica	83.53	0.00e+00	1276.00
IUUC-Sly-111702	Solanum lycopersicum	57.20	0.00e+00	825.00
IUUC-Stu-111962	Solanum tuberosum	56.20	0.00e+00	870.00
IUUC-Tca-121113	Theobroma cacao	56.39	0.00e+00	863.00
IUUC-Tae-125341	Triticum aestivum	75.74	0.00e+00	1128.00
IUUC-Tur-126573	Triticum urartu	52.91	0.00e+00	828.00
IUUC-Vvi-131623	Vitis vinifera	54.78	0.00e+00	873.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence