iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111346

Ensembl Protein ID

Solyc09g018230.1.1

UniProt Accession

K4CS90; K4CS90_SOLLC

Protein Name

RING-type E3 ubiquitin transferase

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc09g018230.1	Solyc09g018230.1.1	Solyc09g018230.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	4.20e-32	110.8	282	354

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           vp++f+CpIsl+lM+dPvv+++G+tydrssI  w++sg++tcP+t+q+lt++dl+ n +l++li  wc e+++
   Q: 282  VPADFRCPISLDLMKDPVVVSTGQTYDRSSITLWFESGHTTCPKTGQTLTHTDLIQNSALKNLIAMWCREQKI 354
           8********************************************************************9876 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MAVSPESFPP RKRRPSANCF VAPNLSDRNL LKSLLLLSSE ISTLKPLLFL LKRNTSSIIR 60
KSKLLSVLFE EILGRDFTYS NTSRGGGGHV TGFPPSAVLC FDELYIVLQR MKTLLEDCRN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCAGTTT CACCTGAATC TTTTCCCCCG AGAAAACGTC GGCCGTCGGC CAACTGTTTC 60
GTGGCTCCGA ATCTCTCCGA TCGCAATCTC CTTAAATCTC TTCTTCTATT ATCATCAGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0010200--P:response to chitin

KEGG

sly:101255124

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000493	Aegilops tauschii	50.32	5.00e-71	260.00
IUUC-Atr-002566	Amborella trichopoda	46.13	3.00e-130	458.00
IUUC-Aly-005828	Arabidopsis lyrata	55.57	0.00e+00	650.00
IUUC-Ath-007101	Arabidopsis thaliana	55.56	0.00e+00	643.00
IUUC-Bdi-014870	Brachypodium distachyon	45.19	3.00e-118	418.00
IUUC-Bol-015511	Brassica oleracea	55.91	0.00e+00	685.00
IUUC-Bra-017197	Brassica rapa	55.91	0.00e+00	682.00
IUUC-Gma-043531	Glycine max	61.05	1.00e-180	625.00
IUUC-Hvu-047557	Hordeum vulgare	47.39	1.00e-112	399.00
IUUC-Lpe-051445	Leersia perrieri	45.59	1.00e-106	379.00
IUUC-Mtr-058241	Medicago truncatula	62.30	0.00e+00	634.00
IUUC-Mac-065033	Musa acuminata	46.73	8.00e-117	413.00
IUUC-Oba-075591	Oryza barthii	45.81	2.00e-112	398.00
IUUC-Obr-076550	Oryza brachyantha	43.16	2.00e-99	356.00
IUUC-Ogl-077709	Oryza glaberrima	45.81	2.00e-112	398.00
IUUC-Ogu-078626	Oryza glumaepatula	45.81	1.00e-112	399.00
IUUC-Oin-080113	Oryza indica	45.65	4.00e-112	398.00
IUUC-Olo-080301	Oryza longistaminata	42.11	7.00e-70	257.00
IUUC-Ome-081924	Oryza meridionalis	46.24	7.00e-115	407.00
IUUC-Oni-082284	Oryza nivara	45.65	3.00e-112	398.00
IUUC-Opu-083971	Oryza punctata	45.53	9.00e-112	397.00
IUUC-Oru-084898	Oryza rufipogon	45.65	1.00e-115	409.00
IUUC-Osa-085986	Oryza sativa	47.53	6.00e-111	394.00
IUUC-Pop-099292	Populus trichocarpa	63.70	0.00e+00	814.00
IUUC-Ppe-101643	Prunus persica	64.09	0.00e+00	824.00
IUUC-Sit-110652	Setaria italica	45.48	3.00e-118	418.00
IUUC-Stu-112435	Solanum tuberosum	97.11	0.00e+00	1230.00
IUUC-Sbi-114567	Sorghum bicolor	45.25	7.00e-110	390.00
IUUC-Tca-121203	Theobroma cacao	65.80	0.00e+00	847.00
IUUC-Tae-123409	Triticum aestivum	50.55	2.00e-104	372.00
IUUC-Vvi-131545	Vitis vinifera	66.47	0.00e+00	777.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence