iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	59.02	0.00e+00	816.00	IUUC-Sce-106159
E3 activity/RING/RING	31.82	1.00e-06	45.80	IUUC-Ots-000012

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Schizosaccharomyces pombe

Functional Description
(View)

Involved in global genome repair (GGR) via nucleotide excision repair (NER), in conjunction with rhp7, after UV irradiation.

Protein Sequence
(Fasta)

MHISTLKVDQ LQNEAVDINS NDTIDSINWK NTRNNHTTQA SLQADNNDEQ SNGQAPFSTT 60
YSEINNIHDV PGNQDEWSSS PIAGIIVESE DEEVVENNLH SQMGTSCNKI NSNSNKGKEN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TATAGCGTTG ATAACCGAAA CATGAATTCG GGCAGTATCC GTAAGCTCTA AACTTATAAG 60
CTTTGAACCC CGTTTTTTAA AAAAATTTAT CCATTCTGAG GAAGAAACCA AAAAGGCACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0238--DNA-binding
KW-0347--Helicase
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00271--Helicase_C
PF00176--SNF2_N
PF00097--zf-C3HC4

SMART

SM00487--DEXDc
SM00490--HELICc
SM00184--RING

Gene Ontology

GO:0000109--C:nucleotide-excision repair complex
GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0004003--F:ATP-dependent DNA helicase activity
GO:0003677--F:DNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0006289--P:nucleotide-excision repair
GO:0016567--P:protein ubiquitination
GO:0006290--P:pyrimidine dimer repair

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000449	Aegilops tauschii	45.31	4.00e-121	426.00
IUUC-Atr-002602	Amborella trichopoda	47.66	3.00e-123	434.00
IUUC-Apl-003679	Anas platyrhynchos	29.19	6.00e-66	244.00
IUUC-Aly-005572	Arabidopsis lyrata	46.67	4.00e-132	463.00
IUUC-Ath-007571	Arabidopsis thaliana	47.47	2.00e-134	471.00
IUUC-Ago-007980	Ashbya gossypii	57.93	0.00e+00	791.00
IUUC-Acl-008061	Aspergillus clavatus	50.38	0.00e+00	677.00
IUUC-Afl-008389	Aspergillus flavus	50.77	0.00e+00	685.00
IUUC-Afu-008775	Aspergillus fumigatus	49.23	0.00e+00	646.00
IUUC-Ani-009475	Aspergillus nidulans	53.25	2.00e-112	398.00
IUUC-Ang-009813	Aspergillus niger	51.38	0.00e+00	691.00
IUUC-Aor-009994	Aspergillus oryzae	50.30	0.00e+00	684.00
IUUC-Ate-010405	Aspergillus terreus	51.00	0.00e+00	679.00
IUUC-Ame-011743	Astyanax mexicanus	31.55	9.00e-71	259.00
IUUC-Bgr-012279	Blumeria graminis	49.62	0.00e+00	654.00
IUUC-Bci-013844	Botrytis cinerea	52.11	0.00e+00	663.00
IUUC-Bdi-015009	Brachypodium distachyon	45.05	6.00e-122	429.00
IUUC-Bol-016388	Brassica oleracea	42.39	4.00e-141	494.00
IUUC-Bra-017729	Brassica rapa	41.15	2.00e-143	501.00
IUUC-Csv-026168	Ciona savignyi	26.06	8.00e-52	196.00
IUUC-Cgl-026730	Colletotrichum gloeosporioides	50.31	0.00e+00	687.00
IUUC-Cne-026934	Cryptococcus neoformans	55.91	0.00e+00	715.00
IUUC-Dse-031540	Dothistroma septosporum	51.79	0.00e+00	660.00
IUUC-Dme-031815	Drosophila melanogaster	25.89	2.00e-44	172.00
IUUC-Ete-032421	Echinops telfairi	29.73	3.00e-49	188.00
IUUC-Fal-037486	Ficedula albicollis	28.38	3.00e-67	248.00
IUUC-Fox-037709	Fusarium oxysporum	50.31	0.00e+00	672.00
IUUC-Fso-038218	Fusarium solani	50.93	0.00e+00	698.00
IUUC-Ggr-040094	Gaeumannomyces graminis	50.46	0.00e+00	669.00
IUUC-Gga-040472	Gallus gallus	28.55	4.00e-65	241.00
IUUC-Gma-042935	Glycine max	47.29	2.00e-134	471.00
IUUC-Hvu-047660	Hordeum vulgare	44.34	1.00e-121	427.00
IUUC-Kpa-049222	Komagataella pastoris	58.97	0.00e+00	810.00
IUUC-Lpe-050970	Leersia perrieri	41.45	2.00e-107	381.00
IUUC-Lma-053125	Leptosphaeria maculans	49.92	0.00e+00	665.00
IUUC-Mor-056942	Magnaporthe oryzae	50.23	0.00e+00	686.00
IUUC-Mpo-057611	Magnaporthe poae	50.46	0.00e+00	668.00
IUUC-Mtr-058123	Medicago truncatula	47.46	3.00e-127	447.00
IUUC-Mla-059170	Melampsora laricipopulina	55.37	0.00e+00	726.00
IUUC-Mga-059553	Meleagris gallopavo	29.08	1.00e-65	243.00
IUUC-Mvi-060400	Microbotryum violaceum	53.34	0.00e+00	717.00
IUUC-Mac-065269	Musa acuminata	44.79	3.00e-97	346.00
IUUC-Nfi-068347	Neosartorya fischeri	50.46	0.00e+00	678.00
IUUC-Ncr-068941	Neurospora crassa	52.00	0.00e+00	710.00
IUUC-Opr-070388	Ochotona princeps	34.63	5.00e-38	151.00
IUUC-Obr-076549	Oryza brachyantha	46.34	2.00e-123	434.00
IUUC-Ogl-077889	Oryza glaberrima	45.38	1.00e-122	431.00
IUUC-Ogu-078593	Oryza glumaepatula	43.03	2.00e-113	400.00
IUUC-Oin-080110	Oryza indica	40.04	2.00e-95	342.00
IUUC-Olo-080282	Oryza longistaminata	40.44	1.00e-104	371.00
IUUC-Ome-081180	Oryza meridionalis	41.40	2.00e-107	381.00
IUUC-Oni-082941	Oryza nivara	43.03	2.00e-113	401.00
IUUC-Opu-083720	Oryza punctata	41.63	6.00e-105	373.00
IUUC-Oru-085272	Oryza rufipogon	41.41	1.00e-103	368.00
IUUC-Osa-085537	Oryza sativa	45.38	3.00e-123	433.00
IUUC-Olu-087669	Ostreococcus lucimarinus	43.48	4.00e-122	430.00
IUUC-Pan-091844	Papio anubis	28.66	7.00e-62	230.00
IUUC-Pno-094792	Phaeosphaeria nodorum	50.85	0.00e+00	674.00
IUUC-Pop-099503	Populus trichocarpa	47.60	1.00e-133	468.00
IUUC-Ppe-102071	Prunus persica	48.29	2.00e-136	477.00
IUUC-Pgr-103403	Puccinia graminis	55.75	0.00e+00	744.00
IUUC-Ptt-103966	Puccinia triticina	56.13	0.00e+00	725.00
IUUC-Pte-104264	Pyrenophora teres	50.23	0.00e+00	666.00
IUUC-Pyt-104815	Pyrenophora triticirepentis	50.23	0.00e+00	665.00
IUUC-Sce-106159	Saccharomyces cerevisiae	59.29	0.00e+00	827.00
IUUC-Sja-107959	Schizosaccharomyces japonicus	70.84	0.00e+00	1064.00
IUUC-Ssl-108523	Sclerotinia sclerotiorum	52.26	0.00e+00	664.00
IUUC-Smo-109139	Selaginella moellendorffii	44.97	8.00e-145	504.00
IUUC-Sit-110565	Setaria italica	45.58	2.00e-122	431.00
IUUC-Sly-111735	Solanum lycopersicum	43.07	9.00e-152	528.00
IUUC-Stu-112856	Solanum tuberosum	47.77	2.00e-133	467.00
IUUC-Sbi-114800	Sorghum bicolor	45.36	4.00e-120	423.00
IUUC-Sre-114938	Sporisorium reilianum	58.31	0.00e+00	768.00
IUUC-Tca-121230	Theobroma cacao	48.58	3.00e-136	477.00
IUUC-Tre-122065	Trichoderma reesei	52.94	0.00e+00	711.00
IUUC-Tvi-122398	Trichoderma virens	52.87	0.00e+00	718.00
IUUC-Tae-125864	Triticum aestivum	45.51	2.00e-121	428.00
IUUC-Tur-126489	Triticum urartu	43.19	3.00e-99	353.00
IUUC-Uma-129441	Ustilago maydis	56.93	0.00e+00	759.00
IUUC-Vda-129735	Verticillium dahliae	49.38	0.00e+00	673.00
IUUC-Vvi-131253	Vitis vinifera	48.28	1.00e-133	468.00
IUUC-Yli-134350	Yarrowia lipolytica	57.71	0.00e+00	785.00
IUUC-Zma-135113	Zea mays	45.07	2.00e-121	427.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence