iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Laf-054145

UUCD1 version

UUC-LoA-00777

Ensembl Protein ID

ENSLAFP00000021733.1

UniProt Accession

G3U1M5; G3U1M5_LOXAF

Protein Name

Uncharacterized protein

Gene Name

RNF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSLAFG00000007382.3	ENSLAFT00000027729.1	ENSLAFP00000021733.1
ENSLAFG00000007382.3	ENSLAFT00000007381.3	ENSLAFP00000006208.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.40e-08	35.5	136	181

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf......kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iC++ +       +  +++ CgHvf+ +Cl       +s +++ +CP+Cr
   Q: 136  CPICMDGYseivqnGRLIVSTECGHVFCSQCL------RDSLKNASTCPTCR 181
           ********55553322255788*********9......4559*********8 PP

Organism

Loxodonta africana

Protein Sequence
(Fasta)

LFPQYPQRKR RGGTVSPRQA QKRTREAAST PEMAVEAEPI ELVESAGDEI VDLTCESLEP 60
VVVDLTHNDS VVIVDERRRP RRNARRLRQD HADSCVVSSD EDESPRDRDV YVTPHTPRGA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTTTCCCTC AATACCCTCA GAGAAAACGT CGTGGTGGAA CAGTCAGTCC TAGACAAGCC 60
CAGAAGCGAA CTCGGGAAGC AGCCTCCACA CCCGAGATGG CTGTGGAAGC AGAACCCATA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016605--C:PML body
GO:0008270--F:zinc ion binding
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0090234--P:regulation of kinetochore assembly
GO:0090169--P:regulation of spindle assembly
GO:0046685--P:response to arsenic-containing substance

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000620	Aegilops tauschii	39.34	1.00e-10	59.70
IUUC-Aml-002206	Ailuropoda melanoleuca	92.11	9.00e-86	308.00
IUUC-Atr-002771	Amborella trichopoda	32.88	2.00e-09	55.80
IUUC-Apl-004120	Anas platyrhynchos	70.31	2.00e-70	258.00
IUUC-Aca-004236	Anolis carolinensis	62.96	7.00e-61	226.00
IUUC-Ame-011555	Astyanax mexicanus	53.12	6.00e-39	153.00
IUUC-Bta-012913	Bos taurus	85.56	3.00e-81	293.00
IUUC-Bdi-014655	Brachypodium distachyon	42.62	1.00e-10	59.70
IUUC-Bol-015811	Brassica oleracea	36.07	4.00e-09	54.30
IUUC-Bra-016890	Brassica rapa	35.09	4.00e-07	47.80
IUUC-Cel-018585	Caenorhabditis elegans	35.14	3.00e-08	51.60
IUUC-Cja-019151	Callithrix jacchus	87.23	5.00e-79	286.00
IUUC-Cfa-020868	Canis familiaris	89.12	2.00e-82	297.00
IUUC-Cpo-022249	Cavia porcellus	82.47	2.00e-73	268.00
IUUC-Csa-024125	Chlorocebus sabaeus	88.24	3.00e-81	293.00
IUUC-Cin-025749	Ciona intestinalis	40.98	1.00e-13	69.30
IUUC-Csv-026318	Ciona savignyi	40.98	9.00e-13	66.60
IUUC-Dre-028145	Danio rerio	42.05	3.00e-32	130.00
IUUC-Dno-029605	Dasypus novemcinctus	89.84	2.00e-88	317.00
IUUC-Dor-030898	Dipodomys ordii	88.77	3.00e-84	303.00
IUUC-Ete-032694	Echinops telfairi	86.10	7.00e-72	262.00
IUUC-Eca-033443	Equus caballus	93.05	3.00e-84	303.00
IUUC-Eeu-034603	Erinaceus europaeus	89.32	4.00e-52	196.00
IUUC-Fca-035507	Felis catus	91.98	1.00e-80	291.00
IUUC-Fal-037382	Ficedula albicollis	70.31	2.00e-63	234.00
IUUC-Gmo-038960	Gadus morhua	71.43	2.00e-18	84.30
IUUC-Gga-040493	Gallus gallus	68.25	2.00e-67	247.00
IUUC-Gac-042194	Gasterosteus aculeatus	48.45	5.00e-37	147.00
IUUC-Gma-042666	Glycine max	37.70	1.00e-08	53.10
IUUC-Ggo-044726	Gorilla gorilla	89.84	4.00e-82	296.00
IUUC-Hsa-046212	Homo sapiens	89.84	4.00e-82	296.00
IUUC-Hvu-047630	Hordeum vulgare	40.00	3.00e-10	58.90
IUUC-Itr-047892	Ictidomys tridecemlineatus	90.53	3.00e-83	300.00
IUUC-Lpe-050920	Leersia perrieri	34.18	2.00e-10	59.30
IUUC-Loc-051907	Lepisosteus oculatus	50.00	4.00e-36	143.00
IUUC-Mcc-055689	Macaca mulatta	88.77	3.00e-81	293.00
IUUC-Meu-056654	Macropus eugenii	47.59	2.00e-40	157.00
IUUC-Mtr-058314	Medicago truncatula	45.45	9.00e-11	59.30
IUUC-Mga-059303	Meleagris gallopavo	68.59	6.00e-69	253.00
IUUC-Mmr-061355	Microcebus murinus	89.84	7.00e-82	295.00
IUUC-Mdo-062968	Monodelphis domestica	66.84	7.00e-66	242.00
IUUC-Mmu-064421	Mus musculus	85.71	6.00e-87	312.00
IUUC-Mac-064573	Musa acuminata	34.67	3.00e-11	62.00
IUUC-Mpu-066522	Mustela putorius furo	91.19	2.00e-86	311.00
IUUC-Mlu-067065	Myotis lucifugus	86.77	1.00e-79	288.00
IUUC-Nle-069198	Nomascus leucogenys	88.24	6.00e-81	292.00
IUUC-Opr-071141	Ochotona princeps	87.17	3.00e-84	303.00
IUUC-Oan-073341	Ornithorhynchus anatinus	64.34	3.00e-34	136.00
IUUC-Ocu-073787	Oryctolagus cuniculus	89.18	1.00e-91	328.00
IUUC-Oba-075460	Oryza barthii	40.32	5.00e-11	61.20
IUUC-Obr-076349	Oryza brachyantha	37.70	7.00e-10	57.80
IUUC-Ogl-077094	Oryza glaberrima	36.71	1.00e-11	63.20
IUUC-Ogu-078677	Oryza glumaepatula	40.32	4.00e-11	61.60
IUUC-Oin-079992	Oryza indica	36.71	1.00e-11	63.20
IUUC-Olo-080257	Oryza longistaminata	41.94	3.00e-11	62.00
IUUC-Ome-081943	Oryza meridionalis	36.71	1.00e-11	63.90
IUUC-Oni-082671	Oryza nivara	40.32	5.00e-11	61.20
IUUC-Opu-083644	Oryza punctata	40.32	6.00e-11	60.80
IUUC-Oru-084650	Oryza rufipogon	40.32	5.00e-11	61.20
IUUC-Osa-086110	Oryza sativa	36.71	1.00e-11	63.20
IUUC-Ola-086970	Oryzias latipes	44.39	1.00e-33	135.00
IUUC-Olu-087634	Ostreococcus lucimarinus	37.29	2.00e-10	58.20
IUUC-Oga-088242	Otolemur garnettii	89.89	1.00e-89	322.00
IUUC-Oar-089469	Ovis aries	87.11	2.00e-90	324.00
IUUC-Ptr-091254	Pan troglodytes	83.96	2.00e-75	274.00
IUUC-Pan-092919	Papio anubis	88.83	8.00e-82	295.00
IUUC-Psi-093929	Pelodiscus sinensis	67.88	9.00e-67	245.00
IUUC-Pma-094118	Petromyzon marinus	48.28	3.00e-21	92.40
IUUC-Ppa-095567	Physcomitrella patens	44.26	2.00e-11	62.40
IUUC-Pfo-097412	Poecilia formosa	48.78	1.00e-34	138.00
IUUC-Pab-098424	Pongo abelii	90.37	1.00e-82	298.00
IUUC-Pop-099483	Populus trichocarpa	37.10	2.00e-09	55.50
IUUC-Pca-100463	Procavia capensis	92.03	1.00e-52	198.00
IUUC-Ppe-101755	Prunus persica	38.71	3.00e-09	53.90
IUUC-Pva-102594	Pteropus vampyrus	89.13	2.00e-57	214.00
IUUC-Rno-105460	Rattus norvegicus	83.77	6.00e-78	283.00
IUUC-Sha-107487	Sarcophilus harrisii	70.10	1.00e-67	248.00
IUUC-Smo-108908	Selaginella moellendorffii	37.10	9.00e-08	50.10
IUUC-Sit-109959	Setaria italica	36.07	2.00e-05	42.70
IUUC-Stu-112694	Solanum tuberosum	39.06	5.00e-09	54.30
IUUC-Sar-113601	Sorex araneus	86.63	3.00e-76	276.00
IUUC-Sbi-114398	Sorghum bicolor	36.07	8.00e-05	40.40
IUUC-Ssc-115911	Sus scrofa	90.91	1.00e-81	295.00
IUUC-Tgu-117264	Taeniopygia guttata	70.53	4.00e-62	230.00
IUUC-Tru-117663	Takifugu rubripes	50.31	2.00e-37	147.00
IUUC-Tsy-118883	Tarsius syrichta	83.78	4.00e-63	233.00
IUUC-Tae-124872	Triticum aestivum	40.00	1.00e-10	59.70
IUUC-Tur-126408	Triticum urartu	39.34	1.00e-10	59.70
IUUC-Ttr-128950	Tursiops truncatus	65.24	5.00e-63	233.00
IUUC-Vvi-130833	Vitis vinifera	40.32	3.00e-10	58.50
IUUC-Xtr-132879	Xenopus tropicalis	59.74	3.00e-38	150.00
IUUC-Xma-133319	Xiphophorus maculatus	47.62	9.00e-32	128.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence