iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114691

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000766

Gene Name

SORBI_007G226500

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb07g029140	Sb07g029140.1	Sb07g029140.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	2.00e-32	111.9	275	346

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceens 73
           +p +flCpI+le+M+dPv+++sG+ty+r+sI+kwl+sg++tcP+ rqpl++ +l Pn++l++li +wc+++ 
   Q: 275  IPNDFLCPITLEIMTDPVIVASGQTYERRSIQKWLDSGERTCPKSRQPLAHLSLAPNYALKNLILQWCDKHM 346
           799******************************************************************996 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MPPPTLPPSS PDDPAVGREM DDEDLVEELL VTVNSARAFA EFRRTQRKEC ANLLRWLQLV 60
LPLLEELREA APRLTDDAYR RLALLGRALA TARRLLRSCH DGSKIYLALE SETVLAKFRD 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCGCCAC CGACGTTGCC ACCGTCGTCC CCGGACGACC CCGCGGTGGG GCGGGAGATG 60
GACGACGAGG ACCTGGTGGA GGAGCTCCTG GTGACCGTGA ACTCGGCGCG CGCCTTCGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_07g029140

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000398	Aegilops tauschii	78.89	0.00e+00	888.00
IUUC-Atr-002787	Amborella trichopoda	56.60	0.00e+00	632.00
IUUC-Aly-006301	Arabidopsis lyrata	51.42	3.00e-174	604.00
IUUC-Ath-007379	Arabidopsis thaliana	50.81	8.00e-171	592.00
IUUC-Bdi-014851	Brachypodium distachyon	77.72	0.00e+00	870.00
IUUC-Bol-016076	Brassica oleracea	51.87	2.00e-176	611.00
IUUC-Bra-017350	Brassica rapa	51.36	6.00e-174	603.00
IUUC-Hvu-047325	Hordeum vulgare	79.75	0.00e+00	901.00
IUUC-Lch-050378	Latimeria chalumnae	33.67	7.00e-10	59.30
IUUC-Lpe-051266	Leersia perrieri	76.35	0.00e+00	900.00
IUUC-Mtr-058419	Medicago truncatula	53.39	2.00e-177	614.00
IUUC-Mac-065150	Musa acuminata	52.80	8.00e-167	579.00
IUUC-Oba-075533	Oryza barthii	81.23	0.00e+00	924.00
IUUC-Obr-076561	Oryza brachyantha	81.01	0.00e+00	921.00
IUUC-Ogl-077209	Oryza glaberrima	81.23	0.00e+00	924.00
IUUC-Ogu-078607	Oryza glumaepatula	81.55	0.00e+00	927.00
IUUC-Oin-080162	Oryza indica	81.55	0.00e+00	928.00
IUUC-Olo-080856	Oryza longistaminata	81.23	0.00e+00	925.00
IUUC-Ome-081763	Oryza meridionalis	81.72	0.00e+00	930.00
IUUC-Oni-082893	Oryza nivara	81.55	0.00e+00	927.00
IUUC-Opu-084068	Oryza punctata	81.42	0.00e+00	933.00
IUUC-Oru-085267	Oryza rufipogon	81.55	0.00e+00	927.00
IUUC-Osa-085448	Oryza sativa	81.55	0.00e+00	927.00
IUUC-Pop-099995	Populus trichocarpa	57.28	0.00e+00	665.00
IUUC-Ppe-101219	Prunus persica	58.50	0.00e+00	677.00
IUUC-Sit-110463	Setaria italica	88.63	0.00e+00	964.00
IUUC-Sly-111424	Solanum lycopersicum	53.98	0.00e+00	639.00
IUUC-Stu-112097	Solanum tuberosum	54.14	0.00e+00	638.00
IUUC-Tca-121039	Theobroma cacao	57.95	0.00e+00	658.00
IUUC-Tae-122916	Triticum aestivum	80.00	0.00e+00	909.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence