iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Aly-005421

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

GL348713

Gene Name

ARALYDRAFT_892430

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_105224.1	scaffold_105224.1	scaffold_105224.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.60e-08	35.6	115	157

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl+++   ++  +vlp C+H fh dC+ +w       + + +CPlCr
   Q: 115  CAVCLSELvdgDK-ARVLPrCNHGFHVDCIDMW------FQSHSTCPLCR 157
           ********77433.888888*************......9999******8 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MDEESIFSKF EGEETMGKVL LFAIVSIFTG ILFLLLLHLY ARLFWWRVEQ HFNLNLIQSD 60
EPGSTVIGRN PRRRRFVFAQ GQEDPPHNAG LDSKILQSIH VIVFKSTDFK DGLECAVCLS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCCACCATT TGTCAGCGAC ATGGACGAAG AATCTATTTT CAGCAAATTC GAAGGAGAAG 60
AGACGATGGG AAAAGTTCTT CTATTCGCAA TCGTATCAAT TTTCACAGGG ATTCTGTTCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0008270--F:zinc ion binding

KEGG

aly:ARALYDRAFT_892430

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-006957	Arabidopsis thaliana	86.15	8.00e-152	528.00
IUUC-Bol-015888	Brassica oleracea	72.42	1.00e-100	358.00
IUUC-Bra-016720	Brassica rapa	72.95	2.00e-104	371.00
IUUC-Gma-044235	Glycine max	40.56	4.00e-44	171.00
IUUC-Lpe-051092	Leersia perrieri	39.38	3.00e-20	92.00
IUUC-Mtr-058409	Medicago truncatula	47.98	2.00e-43	168.00
IUUC-Mac-065123	Musa acuminata	37.56	4.00e-36	144.00
IUUC-Oba-074984	Oryza barthii	46.15	7.00e-25	107.00
IUUC-Ogl-077250	Oryza glaberrima	46.15	9.00e-25	106.00
IUUC-Ogu-078929	Oryza glumaepatula	46.15	6.00e-25	107.00
IUUC-Oin-079559	Oryza indica	46.15	7.00e-25	107.00
IUUC-Ome-081596	Oryza meridionalis	45.45	6.00e-22	97.40
IUUC-Oni-082758	Oryza nivara	47.01	1.00e-25	109.00
IUUC-Opu-083878	Oryza punctata	47.86	5.00e-24	104.00
IUUC-Oru-084427	Oryza rufipogon	46.15	7.00e-25	107.00
IUUC-Osa-086236	Oryza sativa	46.15	9.00e-25	106.00
IUUC-Pop-099297	Populus trichocarpa	50.00	2.00e-41	161.00
IUUC-Ppe-101738	Prunus persica	55.03	3.00e-36	144.00
IUUC-Sly-110862	Solanum lycopersicum	40.49	3.00e-35	141.00
IUUC-Stu-112429	Solanum tuberosum	41.26	3.00e-35	141.00
IUUC-Sbi-114427	Sorghum bicolor	42.50	4.00e-29	121.00
IUUC-Tca-121232	Theobroma cacao	45.74	2.00e-49	188.00
IUUC-Tur-126264	Triticum urartu	30.53	3.00e-24	104.00
IUUC-Vvi-131354	Vitis vinifera	42.47	7.00e-45	173.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence