iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000009015.7	ENSRNOT00000060692.4	ENSRNOP00000057423.2
ENSRNOG00000009015.7	ENSRNOT00000060691.3	ENSRNOP00000057422.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	88.30	0.00e+00	1929.00	IUUC-Hsa-046870

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAEAPPVSGT FKFNTDAAEF IPQERKNSGL NCGTQRRLDS NRIGRRNYSS SPPCHLPRHI 60
PYDDVSAVHQ HGYASGSKPK SPQGFFQSSN KSLKNHGLQN QPWQKLRNEK HQNRIKKAQG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACTGTATCTT CGGGCGGCAC CACCCCCTTG GCCGTCTACA CGCGCGTAGG AACGAATAGT 60
CTCTGGACGC CGGAAATCCG GGACACGTGA CCAGGTGACA GCCCTCGCTC GGTGGCGGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR034078--NFX1_fam
IPR001374--R3H_dom
IPR034076--R3H_NF-X1
IPR019786--Zinc_finger_PHD-type_CS
IPR000967--Znf_NFX1
IPR019787--Znf_PHD-finger
IPR001841--Znf_RING

PROSITE

PS51061--R3H
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS50089--ZF_RING_2

Pfam

PF01424--R3H
PF01422--zf-NF-X1

SMART

SM00393--R3H
SM00438--ZnF_NFX

Gene Ontology

GO:0005829--C:cytosol
GO:0005730--C:nucleolus
GO:0005634--C:nucleus
GO:0005886--C:plasma membrane
GO:0003723--F:RNA binding
GO:0000977--F:RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078--F:transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0008270--F:zinc ion binding
GO:0045347--P:negative regulation of MHC class II biosynthetic process
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0006366--P:transcription from RNA polymerase II promoter

KEGG

rno:313166

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000224	Aegilops tauschii	39.32	5.00e-85	308.00
IUUC-Aml-001716	Ailuropoda melanoleuca	88.04	0.00e+00	1933.00
IUUC-Atr-002895	Amborella trichopoda	38.99	1.00e-134	474.00
IUUC-Apl-003650	Anas platyrhynchos	59.17	0.00e+00	1184.00
IUUC-Aca-004313	Anolis carolinensis	58.71	0.00e+00	1253.00
IUUC-Aly-006515	Arabidopsis lyrata	37.79	7.00e-131	461.00
IUUC-Ath-007056	Arabidopsis thaliana	36.79	4.00e-130	459.00
IUUC-Ago-007777	Ashbya gossypii	32.11	2.00e-85	310.00
IUUC-Acl-008068	Aspergillus clavatus	36.13	8.00e-81	295.00
IUUC-Afl-008499	Aspergillus flavus	36.86	1.00e-46	180.00
IUUC-Afu-009016	Aspergillus fumigatus	34.78	3.00e-109	390.00
IUUC-Ani-009477	Aspergillus nidulans	35.98	4.00e-114	406.00
IUUC-Ang-009605	Aspergillus niger	35.98	1.00e-116	414.00
IUUC-Aor-010166	Aspergillus oryzae	35.52	4.00e-52	199.00
IUUC-Ame-010640	Astyanax mexicanus	62.23	0.00e+00	975.00
IUUC-Bgr-012024	Blumeria graminis	33.42	1.00e-100	361.00
IUUC-Bta-012789	Bos taurus	86.70	0.00e+00	1908.00
IUUC-Bci-013768	Botrytis cinerea	35.22	2.00e-113	404.00
IUUC-Bdi-014723	Brachypodium distachyon	39.80	8.00e-121	428.00
IUUC-Bol-015394	Brassica oleracea	38.01	6.00e-135	475.00
IUUC-Bra-017266	Brassica rapa	38.14	4.00e-133	469.00
IUUC-Cel-018668	Caenorhabditis elegans	40.32	1.00e-152	534.00
IUUC-Cja-019769	Callithrix jacchus	86.03	0.00e+00	1873.00
IUUC-Cfa-020727	Canis familiaris	88.25	0.00e+00	1927.00
IUUC-Cpo-021741	Cavia porcellus	87.76	0.00e+00	1952.00
IUUC-Csa-024054	Chlorocebus sabaeus	88.12	0.00e+00	1923.00
IUUC-Cho-025031	Choloepus hoffmanni	84.31	0.00e+00	1328.00
IUUC-Cin-025164	Ciona intestinalis	46.99	0.00e+00	656.00
IUUC-Csv-026260	Ciona savignyi	46.43	0.00e+00	694.00
IUUC-Cgl-026451	Colletotrichum gloeosporioides	36.07	2.00e-81	297.00
IUUC-Cne-026923	Cryptococcus neoformans	35.75	2.00e-79	290.00
IUUC-Dre-028227	Danio rerio	65.57	0.00e+00	1035.00
IUUC-Dno-029830	Dasypus novemcinctus	83.36	0.00e+00	1820.00
IUUC-Dor-030436	Dipodomys ordii	85.38	0.00e+00	1108.00
IUUC-Dse-031485	Dothistroma septosporum	35.29	6.00e-106	379.00
IUUC-Dme-031875	Drosophila melanogaster	43.81	6.00e-164	571.00
IUUC-Eca-033415	Equus caballus	83.49	0.00e+00	1033.00
IUUC-Eeu-034528	Erinaceus europaeus	86.95	0.00e+00	996.00
IUUC-Fca-036238	Felis catus	91.86	0.00e+00	1309.00
IUUC-Fal-037124	Ficedula albicollis	61.06	0.00e+00	1250.00
IUUC-Fox-038075	Fusarium oxysporum	41.46	8.00e-05	42.70
IUUC-Fso-038310	Fusarium solani	34.83	3.00e-97	350.00
IUUC-Gmo-039506	Gadus morhua	63.69	0.00e+00	957.00
IUUC-Ggr-039984	Gaeumannomyces graminis	36.56	2.00e-120	427.00
IUUC-Gga-040674	Gallus gallus	73.86	0.00e+00	1099.00
IUUC-Gac-041416	Gasterosteus aculeatus	64.25	0.00e+00	971.00
IUUC-Gma-043625	Glycine max	38.20	2.00e-129	457.00
IUUC-Ggo-045017	Gorilla gorilla	87.91	0.00e+00	1920.00
IUUC-Hsa-046870	Homo sapiens	88.30	0.00e+00	1932.00
IUUC-Hvu-047466	Hordeum vulgare	38.60	3.00e-80	293.00
IUUC-Itr-048703	Ictidomys tridecemlineatus	78.91	0.00e+00	664.00
IUUC-Kpa-049244	Komagataella pastoris	30.69	5.00e-72	266.00
IUUC-Lch-050376	Latimeria chalumnae	58.03	0.00e+00	1176.00
IUUC-Lpe-050955	Leersia perrieri	37.00	1.00e-95	344.00
IUUC-Loc-051948	Lepisosteus oculatus	54.29	0.00e+00	1122.00
IUUC-Lma-052950	Leptosphaeria maculans	35.85	3.00e-101	363.00
IUUC-Laf-054206	Loxodonta africana	84.23	0.00e+00	1212.00
IUUC-Mcc-055005	Macaca mulatta	88.04	0.00e+00	1919.00
IUUC-Meu-056120	Macropus eugenii	59.94	0.00e+00	665.00
IUUC-Mor-057238	Magnaporthe oryzae	33.85	6.00e-111	395.00
IUUC-Mpo-057574	Magnaporthe poae	35.39	5.00e-117	415.00
IUUC-Mtr-057823	Medicago truncatula	38.59	3.00e-116	413.00
IUUC-Mla-058822	Melampsora laricipopulina	35.03	7.00e-101	362.00
IUUC-Mga-059785	Meleagris gallopavo	50.62	3.00e-168	585.00
IUUC-Mvi-060543	Microbotryum violaceum	34.64	4.00e-99	356.00
IUUC-Mmr-060611	Microcebus murinus	87.23	0.00e+00	1883.00
IUUC-Mdo-062719	Monodelphis domestica	69.89	0.00e+00	1463.00
IUUC-Mmu-064376	Mus musculus	96.32	0.00e+00	2081.00
IUUC-Mac-064834	Musa acuminata	35.92	2.00e-104	374.00
IUUC-Mpu-066298	Mustela putorius furo	88.56	0.00e+00	1940.00
IUUC-Mlu-067546	Myotis lucifugus	85.61	0.00e+00	1881.00
IUUC-Nfi-068388	Neosartorya fischeri	34.83	7.00e-114	405.00
IUUC-Ncr-068875	Neurospora crassa	34.58	6.00e-104	372.00
IUUC-Nle-069813	Nomascus leucogenys	88.30	0.00e+00	1927.00
IUUC-Opr-070995	Ochotona princeps	77.08	0.00e+00	1340.00
IUUC-Ont-072084	Oreochromis niloticus	66.02	0.00e+00	1027.00
IUUC-Oan-073545	Ornithorhynchus anatinus	56.17	0.00e+00	1132.00
IUUC-Ocu-074092	Oryctolagus cuniculus	83.65	0.00e+00	1847.00
IUUC-Oba-075828	Oryza barthii	38.59	1.00e-101	364.00
IUUC-Obr-076373	Oryza brachyantha	37.45	9.00e-77	281.00
IUUC-Ogl-077043	Oryza glaberrima	40.00	2.00e-112	400.00
IUUC-Ogu-078647	Oryza glumaepatula	39.87	3.00e-110	393.00
IUUC-Oin-079793	Oryza indica	38.75	3.00e-82	299.00
IUUC-Olo-080815	Oryza longistaminata	38.67	8.00e-102	365.00
IUUC-Ome-081650	Oryza meridionalis	39.74	3.00e-113	403.00
IUUC-Oni-082708	Oryza nivara	39.74	7.00e-114	405.00
IUUC-Opu-084078	Oryza punctata	40.27	5.00e-111	395.00
IUUC-Oru-084549	Oryza rufipogon	39.56	8.00e-114	405.00
IUUC-Osa-086095	Oryza sativa	38.06	9.00e-95	341.00
IUUC-Olu-087617	Ostreococcus lucimarinus	35.34	2.00e-11	64.30
IUUC-Oga-088453	Otolemur garnettii	85.80	0.00e+00	1848.00
IUUC-Oar-089769	Ovis aries	86.53	0.00e+00	1898.00
IUUC-Ptr-090803	Pan troglodytes	88.30	0.00e+00	1932.00
IUUC-Pan-092169	Papio anubis	88.04	0.00e+00	1940.00
IUUC-Psi-094065	Pelodiscus sinensis	62.37	0.00e+00	1365.00
IUUC-Pma-094592	Petromyzon marinus	56.32	0.00e+00	867.00
IUUC-Pno-095016	Phaeosphaeria nodorum	29.48	4.00e-15	75.90
IUUC-Ppa-095597	Physcomitrella patens	36.35	1.00e-122	434.00
IUUC-Pfo-096959	Poecilia formosa	62.41	0.00e+00	1045.00
IUUC-Pab-097732	Pongo abelii	93.40	0.00e+00	1247.00
IUUC-Pop-099062	Populus trichocarpa	39.07	8.00e-130	458.00
IUUC-Pca-100219	Procavia capensis	70.90	0.00e+00	1439.00
IUUC-Ppe-101695	Prunus persica	38.41	8.00e-123	435.00
IUUC-Pva-102402	Pteropus vampyrus	80.09	0.00e+00	1695.00
IUUC-Pgr-103317	Puccinia graminis	30.25	4.00e-94	340.00
IUUC-Ptt-103771	Puccinia triticina	30.83	7.00e-85	309.00
IUUC-Pte-104189	Pyrenophora teres	31.25	4.00e-10	60.10
IUUC-Pyt-104801	Pyrenophora triticirepentis	34.89	7.00e-101	362.00
IUUC-Sce-106350	Saccharomyces cerevisiae	30.60	1.00e-81	298.00
IUUC-Sha-106801	Sarcophilus harrisii	69.18	0.00e+00	1469.00
IUUC-Sja-107692	Schizosaccharomyces japonicus	35.32	6.00e-123	435.00
IUUC-Spo-108253	Schizosaccharomyces pombe	37.10	1.00e-119	424.00
IUUC-Ssl-108587	Sclerotinia sclerotiorum	34.96	2.00e-65	243.00
IUUC-Smo-108865	Selaginella moellendorffii	39.10	7.00e-113	401.00
IUUC-Sit-110153	Setaria italica	39.13	8.00e-115	408.00
IUUC-Sly-111638	Solanum lycopersicum	38.49	2.00e-125	443.00
IUUC-Stu-112099	Solanum tuberosum	39.66	5.00e-126	445.00
IUUC-Sar-113030	Sorex araneus	80.82	4.00e-180	625.00
IUUC-Sbi-113944	Sorghum bicolor	38.47	1.00e-117	417.00
IUUC-Sre-115206	Sporisorium reilianum	33.38	1.00e-104	374.00
IUUC-Ssc-115729	Sus scrofa	77.70	0.00e+00	679.00
IUUC-Tgu-117520	Taeniopygia guttata	67.00	0.00e+00	994.00
IUUC-Tru-118487	Takifugu rubripes	65.53	0.00e+00	1019.00
IUUC-Tsy-119363	Tarsius syrichta	79.91	0.00e+00	1686.00
IUUC-Tca-121813	Theobroma cacao	37.80	1.00e-124	441.00
IUUC-Tre-122248	Trichoderma reesei	35.42	3.00e-102	366.00
IUUC-Tvi-122462	Trichoderma virens	36.47	2.00e-110	393.00
IUUC-Tae-123637	Triticum aestivum	39.31	1.00e-112	401.00
IUUC-Tur-126173	Triticum urartu	39.49	1.00e-103	370.00
IUUC-Tme-127213	Tuber melanosporum	36.31	2.00e-116	414.00
IUUC-Tbe-127399	Tupaia belangeri	87.69	0.00e+00	806.00
IUUC-Ttr-128798	Tursiops truncatus	91.53	0.00e+00	898.00
IUUC-Uma-129421	Ustilago maydis	31.76	3.00e-104	373.00
IUUC-Vda-129863	Verticillium dahliae	32.57	5.00e-101	362.00
IUUC-Vvi-131615	Vitis vinifera	37.16	2.00e-137	483.00
IUUC-Xtr-132309	Xenopus tropicalis	58.93	0.00e+00	1178.00
IUUC-Xma-133235	Xiphophorus maculatus	64.44	0.00e+00	1004.00
IUUC-Yli-134536	Yarrowia lipolytica	31.85	2.00e-92	333.00
IUUC-Zma-135358	Zea mays	39.02	1.00e-111	397.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence