iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-005694

Ensembl Protein ID

fgenesh1_pm.C_scaffold_1001379

UniProt Accession

D7KDN8; D7KDN8_ARALL

Genbank Protein ID

EFH66412.1

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

GL348713

Gene Name

RAD23A; ARALYDRAFT_312599

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
fgenesh1_pm.C_scaffold_1001379	fgenesh1_pm.C_scaffold_1001379	fgenesh1_pm.C_scaffold_1001379

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	4.10e-26	91.0	143	183
ULD/UDP/UBQ/UBQ_PIM	9.90e-23	80.6	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 4    edkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           e++++q++eMG   +d+e++ +aLraa+nn+e+Av+yL++g
   Q: 143  EQMVQQIMEMGggsWDKETVTRALRAAYNNPERAVDYLYSG 183
           89************************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mkltvktlkg++fe++v++ dt+ ++K++i+++++   +p+ qq LI++Gk+LkD+ttL e+++ ++ +++++++ksk
   Q: 1    MKLTVKTLKGSHFEIRVQPTDTIMAVKKNIEDSQSkdnYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSK 78
           99*******************************99999*************************************997 PP

Organism

Arabidopsis lyrata

Protein Sequence
(Fasta)

MKLTVKTLKG SHFEIRVQPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV 60
ENKVTEEGFL VVMLSKSKTP SSAGPSSIQP TSTTTSTISP TPLAAPSIAV PASNSTPVQE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGCTAA CCGTTAAGAC TCTCAAGGGT AGCCATTTTG AAATTAGAGT TCAGCCCACC 60
GACACGGTTA GTCCTTCTCC TTTTCTGCTT CCTTGGTTCA AATATTTTCT ATTAGGAAAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

aly:ARALYDRAFT_312599

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ath-007157	Arabidopsis thaliana	93.75	5.00e-179	619.00
IUUC-Acl-008212	Aspergillus clavatus	38.55	3.00e-32	131.00
IUUC-Bci-013933	Botrytis cinerea	35.20	1.00e-36	146.00
IUUC-Bol-015272	Brassica oleracea	87.23	1.00e-165	575.00
IUUC-Bra-016970	Brassica rapa	86.30	6.00e-168	582.00
IUUC-Cho-024814	Choloepus hoffmanni	28.95	4.00e-29	121.00
IUUC-Dor-030358	Dipodomys ordii	41.32	2.00e-35	142.00
IUUC-Fox-037960	Fusarium oxysporum	50.38	3.00e-22	99.00
IUUC-Fso-038107	Fusarium solani	51.20	7.00e-21	94.00
IUUC-Kpa-049314	Komagataella pastoris	29.81	9.00e-34	136.00
IUUC-Lma-053328	Leptosphaeria maculans	39.47	8.00e-10	53.90
IUUC-Laf-054589	Loxodonta africana	35.64	1.00e-46	179.00
IUUC-Mla-058961	Melampsora laricipopulina	46.76	2.00e-25	108.00
IUUC-Mvi-060220	Microbotryum violaceum	50.79	1.00e-25	110.00
IUUC-Mlu-067787	Myotis lucifugus	34.62	2.00e-47	182.00
IUUC-Sce-106214	Saccharomyces cerevisiae	34.31	5.00e-14	71.20
IUUC-Spo-108298	Schizosaccharomyces pombe	36.60	3.00e-44	171.00
IUUC-Tre-121911	Trichoderma reesei	34.04	1.00e-34	139.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence