iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121109

Ensembl Protein ID

EOY17890

UniProt Accession

A0A061FKN2; A0A061FKN2_THECC

Genbank Protein ID

EOY17890.1

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Genbank Nucleotide ID

CM001888

Gene Name

TCM_042592

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_042592	EOY17890	EOY17890
TCM_042592	EOY17891	EOY17891

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	39.92	1.00e-46	184.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Theobroma cacao

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MAASEHTVLQ FNAPSTVSLS AKVRPLVIFN ICDCYVRRPD QAERVIGTLL GSVLPDGTVD 60
IRNSYAVPHT ESSEQVALDI EYHHNMLVSH QKVNPKEVIV GWYSTGLGVT GGSALIHDFY 120

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Nucleotide Sequence
(Fasta)

GGAGACCGGG GGAGACAAGA TGGCGGCCAG CGAGCACACC GTTTTGCAGT TCAATGCGCC 60
GTCAACAGTG AGTCTGTCGG CGAAGGTTCG CCCTCTCGTC ATATTCAACA TCTGTGATTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	67.81	8.00e-104	369.00
IUUC-Aml-001527	Ailuropoda melanoleuca	39.92	4.00e-55	207.00
IUUC-Atr-002686	Amborella trichopoda	77.82	9.00e-117	412.00
IUUC-Apl-003977	Anas platyrhynchos	39.09	1.00e-44	172.00
IUUC-Aca-004335	Anolis carolinensis	39.62	1.00e-56	212.00
IUUC-Aly-005945	Arabidopsis lyrata	79.04	2.00e-124	437.00
IUUC-Ath-007045	Arabidopsis thaliana	77.66	1.00e-122	431.00
IUUC-Acl-008365	Aspergillus clavatus	39.24	5.00e-47	180.00
IUUC-Afl-008742	Aspergillus flavus	37.50	1.00e-44	172.00
IUUC-Afu-009030	Aspergillus fumigatus	39.08	2.00e-46	178.00
IUUC-Ani-009212	Aspergillus nidulans	37.67	1.00e-45	176.00
IUUC-Ang-009712	Aspergillus niger	38.68	7.00e-46	177.00
IUUC-Aor-009885	Aspergillus oryzae	37.85	3.00e-45	174.00
IUUC-Ate-010315	Aspergillus terreus	37.50	1.00e-44	172.00
IUUC-Ame-010801	Astyanax mexicanus	46.07	4.00e-19	87.40
IUUC-Bgr-011982	Blumeria graminis	36.01	6.00e-43	167.00
IUUC-Bta-012804	Bos taurus	39.92	6.00e-55	207.00
IUUC-Bci-013891	Botrytis cinerea	34.39	8.00e-35	140.00
IUUC-Bdi-014328	Brachypodium distachyon	72.99	9.00e-108	382.00
IUUC-Bol-015446	Brassica oleracea	79.38	5.00e-127	446.00
IUUC-Bra-016862	Brassica rapa	78.69	3.00e-126	443.00
IUUC-Cel-018171	Caenorhabditis elegans	27.65	4.00e-25	107.00
IUUC-Cja-019335	Callithrix jacchus	39.92	5.00e-55	207.00
IUUC-Cfa-020138	Canis familiaris	39.54	9.00e-55	206.00
IUUC-Cpo-022109	Cavia porcellus	36.30	2.00e-43	168.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	43.93	3.00e-63	234.00
IUUC-Csa-023994	Chlorocebus sabaeus	39.92	4.00e-55	207.00
IUUC-Cho-024351	Choloepus hoffmanni	35.47	2.00e-31	129.00
IUUC-Cin-025801	Ciona intestinalis	40.53	2.00e-51	195.00
IUUC-Csv-025805	Ciona savignyi	40.91	2.00e-51	195.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	31.62	6.00e-33	134.00
IUUC-Cne-026868	Cryptococcus neoformans	33.58	3.00e-25	108.00
IUUC-Cme-027328	Cyanidioschyzon merolae	28.43	3.00e-20	91.70
IUUC-Dre-028085	Danio rerio	40.68	1.00e-55	209.00
IUUC-Dno-030099	Dasypus novemcinctus	39.92	6.00e-55	207.00
IUUC-Dor-030324	Dipodomys ordii	36.50	8.00e-46	176.00
IUUC-Dse-031314	Dothistroma septosporum	38.25	3.00e-45	174.00
IUUC-Dme-031926	Drosophila melanogaster	37.96	7.00e-49	186.00
IUUC-Ete-032569	Echinops telfairi	38.40	8.00e-50	189.00
IUUC-Eca-033502	Equus caballus	38.11	3.00e-49	187.00
IUUC-Eeu-034883	Erinaceus europaeus	34.62	4.00e-26	109.00
IUUC-Fca-035873	Felis catus	39.92	4.00e-55	207.00
IUUC-Fal-036921	Ficedula albicollis	39.92	6.00e-55	206.00
IUUC-Fox-037765	Fusarium oxysporum	29.59	3.00e-27	115.00
IUUC-Fso-038240	Fusarium solani	29.77	2.00e-28	118.00
IUUC-Gmo-038864	Gadus morhua	39.25	2.00e-55	207.00
IUUC-Ggr-039862	Gaeumannomyces graminis	32.09	6.00e-30	124.00
IUUC-Gga-040952	Gallus gallus	39.92	1.00e-54	206.00
IUUC-Gac-041677	Gasterosteus aculeatus	41.51	9.00e-59	219.00
IUUC-Gma-043061	Glycine max	84.08	7.00e-123	432.00
IUUC-Ggo-045591	Gorilla gorilla	39.92	4.00e-55	207.00
IUUC-Hsa-046860	Homo sapiens	39.92	4.00e-55	207.00
IUUC-Hvu-047410	Hordeum vulgare	73.65	3.00e-60	222.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	40.30	1.00e-55	209.00
IUUC-Lch-049410	Latimeria chalumnae	38.92	1.00e-34	139.00
IUUC-Lpe-051102	Leersia perrieri	75.79	1.00e-112	398.00
IUUC-Loc-052016	Lepisosteus oculatus	37.83	7.00e-45	173.00
IUUC-Lma-053157	Leptosphaeria maculans	35.69	2.00e-43	168.00
IUUC-Laf-054568	Loxodonta africana	39.92	8.00e-55	206.00
IUUC-Mcc-054613	Macaca mulatta	39.92	4.00e-55	207.00
IUUC-Mor-057104	Magnaporthe oryzae	31.76	1.00e-29	123.00
IUUC-Mtr-058445	Medicago truncatula	81.94	2.00e-134	470.00
IUUC-Mla-059038	Melampsora laricipopulina	30.90	7.00e-32	130.00
IUUC-Mga-059548	Meleagris gallopavo	39.21	4.00e-47	180.00
IUUC-Mvi-060520	Microbotryum violaceum	29.54	7.00e-17	80.50
IUUC-Mdo-062376	Monodelphis domestica	38.78	5.00e-54	203.00
IUUC-Mmu-063254	Mus musculus	39.92	4.00e-55	207.00
IUUC-Mac-065635	Musa acuminata	71.33	9.00e-113	398.00
IUUC-Mpu-066314	Mustela putorius furo	39.92	3.00e-55	207.00
IUUC-Mlu-067512	Myotis lucifugus	39.92	9.00e-56	209.00
IUUC-Nfi-068262	Neosartorya fischeri	38.89	2.00e-46	178.00
IUUC-Ncr-068872	Neurospora crassa	33.22	8.00e-32	130.00
IUUC-Nle-070118	Nomascus leucogenys	39.92	4.00e-55	207.00
IUUC-Opr-071228	Ochotona princeps	39.21	9.00e-48	182.00
IUUC-Ont-072600	Oreochromis niloticus	40.30	2.00e-57	215.00
IUUC-Oan-073584	Ornithorhynchus anatinus	38.77	2.00e-48	184.00
IUUC-Ocu-074542	Oryctolagus cuniculus	39.92	1.00e-55	209.00
IUUC-Oba-075923	Oryza barthii	75.87	9.00e-117	412.00
IUUC-Obr-076313	Oryza brachyantha	76.22	6.00e-112	395.00
IUUC-Ogl-076932	Oryza glaberrima	75.87	9.00e-117	412.00
IUUC-Ogu-078152	Oryza glumaepatula	75.87	9.00e-117	412.00
IUUC-Oin-079528	Oryza indica	75.87	9.00e-117	412.00
IUUC-Olo-080401	Oryza longistaminata	75.87	9.00e-117	412.00
IUUC-Ome-081553	Oryza meridionalis	75.87	9.00e-117	412.00
IUUC-Oni-082090	Oryza nivara	75.87	3.00e-117	413.00
IUUC-Opu-083583	Oryza punctata	76.22	1.00e-111	395.00
IUUC-Oru-084492	Oryza rufipogon	75.87	9.00e-117	412.00
IUUC-Osa-085383	Oryza sativa	75.87	9.00e-117	412.00
IUUC-Ola-086835	Oryzias latipes	40.68	3.00e-57	214.00
IUUC-Olu-087716	Ostreococcus lucimarinus	36.30	7.00e-39	153.00
IUUC-Oga-088886	Otolemur garnettii	40.30	7.00e-56	210.00
IUUC-Oar-090079	Ovis aries	39.92	4.00e-55	207.00
IUUC-Ptr-091457	Pan troglodytes	39.92	4.00e-55	207.00
IUUC-Pan-092317	Papio anubis	37.36	6.00e-32	129.00
IUUC-Psi-093129	Pelodiscus sinensis	37.25	2.00e-48	184.00
IUUC-Pma-094488	Petromyzon marinus	39.92	2.00e-56	211.00
IUUC-Pno-095049	Phaeosphaeria nodorum	36.27	5.00e-45	173.00
IUUC-Ppa-095341	Physcomitrella patens	64.29	2.00e-99	354.00
IUUC-Pfo-096286	Poecilia formosa	39.54	9.00e-57	212.00
IUUC-Pab-097765	Pongo abelii	39.92	4.00e-55	207.00
IUUC-Pop-099131	Populus trichocarpa	86.76	6.00e-136	475.00
IUUC-Pca-100524	Procavia capensis	33.19	5.00e-33	133.00
IUUC-Ppe-101934	Prunus persica	87.06	4.00e-141	493.00
IUUC-Pva-102577	Pteropus vampyrus	39.92	1.00e-55	209.00
IUUC-Pgr-103521	Puccinia graminis	34.87	3.00e-34	138.00
IUUC-Pte-104304	Pyrenophora teres	36.97	1.00e-45	176.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	36.97	2.00e-45	175.00
IUUC-Rno-105717	Rattus norvegicus	40.30	6.00e-56	210.00
IUUC-Sha-107190	Sarcophilus harrisii	39.00	2.00e-52	199.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	32.97	1.00e-35	142.00
IUUC-Spo-108355	Schizosaccharomyces pombe	35.97	1.00e-39	155.00
IUUC-Smo-109374	Selaginella moellendorffii	66.54	1.00e-104	371.00
IUUC-Sit-110119	Setaria italica	76.98	7.00e-113	399.00
IUUC-Sly-111570	Solanum lycopersicum	80.42	2.00e-119	421.00
IUUC-Stu-112308	Solanum tuberosum	81.47	7.00e-130	455.00
IUUC-Sar-113515	Sorex araneus	39.58	5.00e-17	79.70
IUUC-Sbi-114605	Sorghum bicolor	76.23	3.00e-111	394.00
IUUC-Sre-114906	Sporisorium reilianum	36.60	1.00e-40	159.00
IUUC-Tgu-117087	Taeniopygia guttata	39.65	5.00e-47	180.00
IUUC-Tru-117700	Takifugu rubripes	40.30	2.00e-58	218.00
IUUC-Tni-120470	Tetraodon nigroviridis	39.92	5.00e-57	213.00
IUUC-Tre-122095	Trichoderma reesei	29.89	2.00e-27	115.00
IUUC-Tvi-122580	Trichoderma virens	29.54	8.00e-27	113.00
IUUC-Tae-125129	Triticum aestivum	74.44	2.00e-110	390.00
IUUC-Tur-126658	Triticum urartu	66.18	4.00e-100	356.00
IUUC-Tme-127043	Tuber melanosporum	37.01	8.00e-43	166.00
IUUC-Tbe-127927	Tupaia belangeri	39.92	4.00e-55	207.00
IUUC-Ttr-129231	Tursiops truncatus	39.92	3.00e-55	207.00
IUUC-Uma-129578	Ustilago maydis	37.36	9.00e-40	156.00
IUUC-Vda-129730	Verticillium dahliae	31.51	2.00e-32	132.00
IUUC-Vvi-130968	Vitis vinifera	85.96	1.00e-134	471.00
IUUC-Xtr-132203	Xenopus tropicalis	39.54	4.00e-53	200.00
IUUC-Xma-133972	Xiphophorus maculatus	39.54	1.00e-56	212.00
IUUC-Yli-134553	Yarrowia lipolytica	31.67	1.00e-30	126.00
IUUC-Zma-134941	Zea mays	74.72	3.00e-102	363.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence