iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Csv-025805

Ensembl Protein ID

ENSCSAVP00000004594.1

UniProt Accession

H2YGZ5; H2YGZ5_CIOSA

Protein Name

Eukaryotic translation initiation factor 3 subunit F; Eukaryotic translation initiation factor 3 subunit 5

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCSAVG00000002738.1	ENSCSAVT00000004661.1	ENSCSAVP00000004594.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	55.39	9.00e-85	311.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Ciona savignyi

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MNFVTPHAAF TKGRRAKMAE GRKVKVHPVV LFSIIDSFER RKEDAKRVIG TLLGTVDANA 60
VTITNTFCVP HTESDDEVAF DMEFARNMYD LHRKVNPTEA IVGWYATGKD ITEHSVLIHE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGGTCCCTTA TTTTTGATAA TTTATACGGT TGGCTGATCA CTGAATTCGC TAAGTCGACT 60
ATGAATTTCG TCACTCCACA TGCTGCTTTC ACGAAGGGTA GGCGAGCAAA AATGGCGGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	38.36	8.00e-47	179.00
IUUC-Aml-001527	Ailuropoda melanoleuca	55.22	1.00e-85	308.00
IUUC-Atr-002686	Amborella trichopoda	44.70	4.00e-51	192.00
IUUC-Apl-003977	Anas platyrhynchos	52.47	1.00e-67	247.00
IUUC-Aca-004335	Anolis carolinensis	55.39	3.00e-88	317.00
IUUC-Aly-005945	Arabidopsis lyrata	38.26	2.00e-45	174.00
IUUC-Ath-007045	Arabidopsis thaliana	38.26	4.00e-44	169.00
IUUC-Acl-008365	Aspergillus clavatus	36.36	1.00e-46	178.00
IUUC-Afl-008742	Aspergillus flavus	35.90	5.00e-46	176.00
IUUC-Afu-009030	Aspergillus fumigatus	35.53	8.00e-47	179.00
IUUC-Ani-009212	Aspergillus nidulans	36.63	9.00e-48	182.00
IUUC-Ang-009712	Aspergillus niger	36.26	5.00e-47	179.00
IUUC-Aor-009885	Aspergillus oryzae	35.90	2.00e-47	180.00
IUUC-Ate-010315	Aspergillus terreus	35.90	2.00e-45	174.00
IUUC-Ame-010801	Astyanax mexicanus	67.86	3.00e-32	130.00
IUUC-Bgr-011982	Blumeria graminis	30.96	1.00e-39	155.00
IUUC-Bta-012804	Bos taurus	55.02	8.00e-86	308.00
IUUC-Bci-013891	Botrytis cinerea	29.89	1.00e-33	135.00
IUUC-Bdi-014328	Brachypodium distachyon	39.39	7.00e-47	179.00
IUUC-Bol-015446	Brassica oleracea	36.46	2.00e-46	177.00
IUUC-Bra-016862	Brassica rapa	36.46	1.00e-46	178.00
IUUC-Cel-018171	Caenorhabditis elegans	29.69	3.00e-36	144.00
IUUC-Cja-019335	Callithrix jacchus	55.39	2.00e-86	310.00
IUUC-Cfa-020138	Canis familiaris	54.85	3.00e-85	306.00
IUUC-Cpo-022109	Cavia porcellus	49.82	2.00e-73	267.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	36.67	7.00e-50	189.00
IUUC-Csa-023994	Chlorocebus sabaeus	55.39	2.00e-86	310.00
IUUC-Cho-024351	Choloepus hoffmanni	43.12	1.00e-58	218.00
IUUC-Cin-025801	Ciona intestinalis	90.54	8.00e-162	560.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	28.43	4.00e-35	140.00
IUUC-Cne-026868	Cryptococcus neoformans	32.97	4.00e-32	129.00
IUUC-Cme-027328	Cyanidioschyzon merolae	25.56	1.00e-22	98.60
IUUC-Dre-028085	Danio rerio	54.85	1.00e-84	304.00
IUUC-Dno-030099	Dasypus novemcinctus	55.22	1.00e-85	308.00
IUUC-Dor-030324	Dipodomys ordii	49.63	2.00e-73	267.00
IUUC-Dse-031314	Dothistroma septosporum	35.13	6.00e-46	176.00
IUUC-Dme-031926	Drosophila melanogaster	45.52	2.00e-70	257.00
IUUC-Ete-032569	Echinops telfairi	52.79	2.00e-80	290.00
IUUC-Eca-033502	Equus caballus	53.16	8.00e-79	285.00
IUUC-Eeu-034883	Erinaceus europaeus	41.62	3.00e-35	139.00
IUUC-Fca-035873	Felis catus	55.22	9.00e-86	308.00
IUUC-Fal-036921	Ficedula albicollis	55.39	9.00e-87	311.00
IUUC-Fox-037765	Fusarium oxysporum	27.76	7.00e-30	122.00
IUUC-Fso-038240	Fusarium solani	28.76	7.00e-31	126.00
IUUC-Gmo-038864	Gadus morhua	53.73	3.00e-85	306.00
IUUC-Ggr-039862	Gaeumannomyces graminis	29.96	7.00e-32	129.00
IUUC-Gga-040952	Gallus gallus	55.39	1.00e-86	311.00
IUUC-Gac-041677	Gasterosteus aculeatus	51.94	3.00e-83	299.00
IUUC-Gma-043061	Glycine max	39.77	1.00e-43	168.00
IUUC-Ggo-045591	Gorilla gorilla	55.39	2.00e-86	310.00
IUUC-Hsa-046860	Homo sapiens	55.39	2.00e-86	310.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	54.85	3.00e-85	306.00
IUUC-Lch-049410	Latimeria chalumnae	51.69	1.00e-54	204.00
IUUC-Lpe-051102	Leersia perrieri	38.91	8.00e-45	172.00
IUUC-Loc-052016	Lepisosteus oculatus	48.58	2.00e-71	260.00
IUUC-Lma-053157	Leptosphaeria maculans	34.17	3.00e-44	170.00
IUUC-Laf-054568	Loxodonta africana	55.39	2.00e-86	310.00
IUUC-Mcc-054613	Macaca mulatta	55.39	2.00e-86	310.00
IUUC-Meu-056832	Macropus eugenii	36.36	1.00e-34	137.00
IUUC-Mor-057104	Magnaporthe oryzae	31.41	3.00e-34	137.00
IUUC-Mtr-058445	Medicago truncatula	39.39	9.00e-54	201.00
IUUC-Mla-059038	Melampsora laricipopulina	28.22	2.00e-29	120.00
IUUC-Mga-059548	Meleagris gallopavo	52.54	1.00e-71	261.00
IUUC-Mvi-060520	Microbotryum violaceum	28.57	6.00e-22	96.30
IUUC-Mdo-062376	Monodelphis domestica	54.10	5.00e-85	305.00
IUUC-Mmu-063254	Mus musculus	55.22	2.00e-85	306.00
IUUC-Mac-065635	Musa acuminata	39.86	2.00e-47	181.00
IUUC-Mpu-066314	Mustela putorius furo	55.22	8.00e-86	308.00
IUUC-Mlu-067512	Myotis lucifugus	54.85	7.00e-86	308.00
IUUC-Nfi-068262	Neosartorya fischeri	35.53	8.00e-47	179.00
IUUC-Ncr-068872	Neurospora crassa	33.33	6.00e-37	146.00
IUUC-Nle-070118	Nomascus leucogenys	55.22	9.00e-86	308.00
IUUC-Opr-071228	Ochotona princeps	53.62	5.00e-72	262.00
IUUC-Ont-072600	Oreochromis niloticus	54.10	8.00e-85	305.00
IUUC-Oan-073584	Ornithorhynchus anatinus	52.12	6.00e-72	261.00
IUUC-Ocu-074542	Oryctolagus cuniculus	55.60	1.00e-86	311.00
IUUC-Oba-075923	Oryza barthii	39.02	9.00e-47	178.00
IUUC-Obr-076313	Oryza brachyantha	38.91	3.00e-45	173.00
IUUC-Ogl-076932	Oryza glaberrima	39.02	9.00e-47	178.00
IUUC-Ogu-078152	Oryza glumaepatula	39.02	9.00e-47	178.00
IUUC-Oin-079528	Oryza indica	39.02	9.00e-47	178.00
IUUC-Olo-080401	Oryza longistaminata	39.02	9.00e-47	178.00
IUUC-Ome-081553	Oryza meridionalis	39.39	5.00e-47	179.00
IUUC-Oni-082090	Oryza nivara	39.02	8.00e-47	178.00
IUUC-Opu-083583	Oryza punctata	38.91	2.00e-45	174.00
IUUC-Oru-084492	Oryza rufipogon	39.02	9.00e-47	178.00
IUUC-Osa-085383	Oryza sativa	39.02	9.00e-47	178.00
IUUC-Ola-086835	Oryzias latipes	53.36	1.00e-82	297.00
IUUC-Olu-087716	Ostreococcus lucimarinus	28.73	3.00e-30	123.00
IUUC-Oga-088886	Otolemur garnettii	55.60	2.00e-86	310.00
IUUC-Oar-090079	Ovis aries	55.02	8.00e-86	308.00
IUUC-Ptr-091457	Pan troglodytes	55.39	2.00e-86	310.00
IUUC-Pan-092317	Papio anubis	49.73	7.00e-49	184.00
IUUC-Psi-093129	Pelodiscus sinensis	49.08	4.00e-74	269.00
IUUC-Pma-094488	Petromyzon marinus	57.09	1.00e-90	324.00
IUUC-Pno-095049	Phaeosphaeria nodorum	34.17	3.00e-45	173.00
IUUC-Ppa-095341	Physcomitrella patens	40.30	5.00e-56	209.00
IUUC-Pfo-096286	Poecilia formosa	53.73	7.00e-85	305.00
IUUC-Pab-097765	Pongo abelii	55.39	2.00e-86	310.00
IUUC-Pop-099131	Populus trichocarpa	39.77	5.00e-50	189.00
IUUC-Pca-100524	Procavia capensis	41.88	5.00e-47	179.00
IUUC-Ppe-101934	Prunus persica	41.67	4.00e-55	206.00
IUUC-Pva-102577	Pteropus vampyrus	54.85	9.00e-86	308.00
IUUC-Pgr-103521	Puccinia graminis	28.80	6.00e-27	112.00
IUUC-Pte-104304	Pyrenophora teres	34.53	8.00e-45	172.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	34.89	2.00e-45	174.00
IUUC-Rno-105717	Rattus norvegicus	55.22	1.00e-85	308.00
IUUC-Sha-107190	Sarcophilus harrisii	54.41	8.00e-83	298.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	34.41	3.00e-42	163.00
IUUC-Spo-108355	Schizosaccharomyces pombe	36.20	1.00e-46	178.00
IUUC-Smo-109374	Selaginella moellendorffii	39.77	4.00e-56	209.00
IUUC-Sit-110119	Setaria italica	38.26	3.00e-46	176.00
IUUC-Sly-111570	Solanum lycopersicum	40.76	2.00e-46	177.00
IUUC-Stu-112308	Solanum tuberosum	40.42	3.00e-50	190.00
IUUC-Sar-113515	Sorex araneus	51.06	2.00e-23	100.00
IUUC-Sbi-114605	Sorghum bicolor	38.26	5.00e-46	176.00
IUUC-Sre-114906	Sporisorium reilianum	38.24	1.00e-48	184.00
IUUC-Tgu-117087	Taeniopygia guttata	52.12	4.00e-70	255.00
IUUC-Tru-117700	Takifugu rubripes	52.24	2.00e-82	296.00
IUUC-Tni-120470	Tetraodon nigroviridis	52.99	5.00e-84	302.00
IUUC-Tca-121109	Theobroma cacao	40.91	2.00e-44	170.00
IUUC-Tre-122095	Trichoderma reesei	29.33	4.00e-31	127.00
IUUC-Tvi-122580	Trichoderma virens	29.33	3.00e-31	127.00
IUUC-Tae-125129	Triticum aestivum	40.15	5.00e-49	186.00
IUUC-Tur-126658	Triticum urartu	35.07	3.00e-40	157.00
IUUC-Tme-127043	Tuber melanosporum	35.53	6.00e-43	166.00
IUUC-Tbe-127927	Tupaia belangeri	55.22	9.00e-86	308.00
IUUC-Ttr-129231	Tursiops truncatus	54.85	3.00e-85	306.00
IUUC-Uma-129578	Ustilago maydis	37.87	2.00e-47	180.00
IUUC-Vda-129730	Verticillium dahliae	29.24	1.00e-37	148.00
IUUC-Vpa-130677	Vicugna pacos	28.68	3.00e-10	57.80
IUUC-Vvi-130968	Vitis vinifera	40.81	4.00e-50	189.00
IUUC-Xtr-132203	Xenopus tropicalis	56.51	1.00e-87	314.00
IUUC-Xma-133972	Xiphophorus maculatus	53.36	4.00e-84	302.00
IUUC-Yli-134553	Yarrowia lipolytica	33.09	2.00e-38	150.00
IUUC-Zma-134941	Zea mays	38.26	3.00e-42	163.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence