iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Gga-040143

Ensembl Protein ID

ENSGALP00000058494.1

UniProt Accession

Q5ZLK1; DCA13_CHICK

Genbank Protein ID

CAG31392.1

Protein Name

DDB1- and CUL4-associated factor 13; WD repeat and SOF domain-containing protein 1

Genbank Nucleotide ID

AJ719733

Gene Name

DCAF13; WDSOF1; RCJMB04_5m12

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSGALG00000034618.2	ENSGALT00000065707.1	ENSGALP00000058494.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-21	76.5	64	103

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH d+v+c+a    +  +++sG+ Dg +++W+l++  +++
   Q: 64   GHRDGVNCMAKhpKSlSTVLSGACDGEVRIWNLTKRQCIR 103
           8*******97446335679**************9988865 PP

Organism

Gallus gallus

Functional Description
(View)

Possible role in ribosomal RNA processing. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex (By similarity).

Protein Sequence
(Fasta)

MRVKVLSRNP DDYVRETKLD LQRVPRNYDP ALHPFEVARE YVRALNATKL ERVFAKPFLS 60
SLDGHRDGVN CMAKHPKSLS TVLSGACDGE VRIWNLTKRQ CIRALQAHEG FVRGMCARFC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGGCGGAAG GAGGCGGCCG TTGGTCGGCG GGGCGGAAGT GGATGTGCGT GCCCGTGTGC 60
GTGCTCGGCG GCGAGGATGC GGGTGAAGGT GCTGAGCCGC AATCCCGATG ACTATGTCCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0833--Ubl conjugation pathway
KW-0853--WD repeat

Interpro

IPR007287--Sof1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04158--Sof1
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0030054--C:cell junction
GO:0005813--C:centrosome
GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005829--C:cytosol
GO:0005730--C:nucleolus
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0016567--P:protein ubiquitination

KEGG

gga:420263

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002178	Ailuropoda melanoleuca	88.54	0.00e+00	844.00
IUUC-Atr-002799	Amborella trichopoda	47.79	4.00e-134	471.00
IUUC-Apl-003675	Anas platyrhynchos	92.83	0.00e+00	841.00
IUUC-Aca-004792	Anolis carolinensis	89.66	0.00e+00	861.00
IUUC-Aly-005998	Arabidopsis lyrata	47.35	1.00e-132	466.00
IUUC-Ath-007526	Arabidopsis thaliana	47.35	2.00e-132	465.00
IUUC-Ago-007774	Ashbya gossypii	46.24	3.00e-123	434.00
IUUC-Acl-008024	Aspergillus clavatus	44.99	3.00e-109	388.00
IUUC-Afu-008930	Aspergillus fumigatus	44.37	1.00e-107	382.00
IUUC-Ani-009370	Aspergillus nidulans	44.22	2.00e-108	385.00
IUUC-Ang-009827	Aspergillus niger	45.92	1.00e-112	399.00
IUUC-Aor-010060	Aspergillus oryzae	43.81	1.00e-104	372.00
IUUC-Ate-010434	Aspergillus terreus	46.98	1.00e-94	339.00
IUUC-Ame-011967	Astyanax mexicanus	72.52	0.00e+00	717.00
IUUC-Bgr-011989	Blumeria graminis	45.90	2.00e-113	402.00
IUUC-Bta-013291	Bos taurus	64.81	3.00e-172	597.00
IUUC-Bci-013868	Botrytis cinerea	43.36	1.00e-109	389.00
IUUC-Bdi-014343	Brachypodium distachyon	49.78	9.00e-128	449.00
IUUC-Bol-015740	Brassica oleracea	46.24	6.00e-124	437.00
IUUC-Bra-016689	Brassica rapa	46.24	3.00e-122	431.00
IUUC-Cel-018536	Caenorhabditis elegans	49.15	9.00e-124	436.00
IUUC-Cja-018779	Callithrix jacchus	89.21	0.00e+00	860.00
IUUC-Cfa-020105	Canis familiaris	89.66	0.00e+00	860.00
IUUC-Cpo-021538	Cavia porcellus	87.42	0.00e+00	816.00
IUUC-Cre-022798	Chlamydomonas reinhardtii	53.99	2.00e-50	191.00
IUUC-Csa-023492	Chlorocebus sabaeus	88.99	0.00e+00	857.00
IUUC-Cho-024497	Choloepus hoffmanni	78.68	2.00e-152	531.00
IUUC-Cin-025524	Ciona intestinalis	64.25	4.00e-176	610.00
IUUC-Csv-026197	Ciona savignyi	64.33	5.00e-178	617.00
IUUC-Cgl-026745	Colletotrichum gloeosporioides	40.89	1.00e-96	346.00
IUUC-Cne-026840	Cryptococcus neoformans	37.58	2.00e-82	301.00
IUUC-Cme-027111	Cyanidioschyzon merolae	35.13	2.00e-73	269.00
IUUC-Dre-027471	Danio rerio	75.81	0.00e+00	729.00
IUUC-Dno-029790	Dasypus novemcinctus	85.87	0.00e+00	669.00
IUUC-Dor-030971	Dipodomys ordii	71.01	0.00e+00	669.00
IUUC-Dse-031563	Dothistroma septosporum	44.32	8.00e-109	387.00
IUUC-Dme-032161	Drosophila melanogaster	59.73	3.00e-165	574.00
IUUC-Ete-033127	Echinops telfairi	82.33	0.00e+00	787.00
IUUC-Eca-033531	Equus caballus	90.09	0.00e+00	820.00
IUUC-Eeu-034663	Erinaceus europaeus	76.29	0.00e+00	705.00
IUUC-Fca-036258	Felis catus	89.89	0.00e+00	862.00
IUUC-Fal-037456	Ficedula albicollis	95.28	0.00e+00	847.00
IUUC-Fox-038025	Fusarium oxysporum	44.77	3.00e-107	382.00
IUUC-Fso-038344	Fusarium solani	44.91	4.00e-102	364.00
IUUC-Gmo-039643	Gadus morhua	76.18	0.00e+00	753.00
IUUC-Ggr-039816	Gaeumannomyces graminis	46.12	9.00e-107	380.00
IUUC-Gac-041665	Gasterosteus aculeatus	79.91	0.00e+00	772.00
IUUC-Gma-043073	Glycine max	47.79	4.00e-130	457.00
IUUC-Ggo-045058	Gorilla gorilla	88.99	0.00e+00	859.00
IUUC-Hsa-046843	Homo sapiens	88.54	0.00e+00	853.00
IUUC-Hvu-047654	Hordeum vulgare	49.01	6.00e-75	273.00
IUUC-Itr-048822	Ictidomys tridecemlineatus	88.54	0.00e+00	854.00
IUUC-Kpa-049232	Komagataella pastoris	47.38	5.00e-127	447.00
IUUC-Lch-050542	Latimeria chalumnae	81.36	0.00e+00	825.00
IUUC-Lpe-051622	Leersia perrieri	49.56	8.00e-130	456.00
IUUC-Loc-052674	Lepisosteus oculatus	77.58	0.00e+00	751.00
IUUC-Lma-053108	Leptosphaeria maculans	44.69	3.00e-111	395.00
IUUC-Laf-053385	Loxodonta africana	88.09	0.00e+00	833.00
IUUC-Mcc-055151	Macaca mulatta	88.54	0.00e+00	855.00
IUUC-Meu-056230	Macropus eugenii	89.52	5.00e-118	417.00
IUUC-Mor-057013	Magnaporthe oryzae	44.68	7.00e-103	367.00
IUUC-Mpo-057530	Magnaporthe poae	46.12	1.00e-107	382.00
IUUC-Mtr-058187	Medicago truncatula	47.79	8.00e-131	459.00
IUUC-Mla-058964	Melampsora laricipopulina	40.62	5.00e-95	341.00
IUUC-Mga-059712	Meleagris gallopavo	97.89	0.00e+00	857.00
IUUC-Mvi-060370	Microbotryum violaceum	42.18	2.00e-68	253.00
IUUC-Mmr-061340	Microcebus murinus	85.08	0.00e+00	801.00
IUUC-Mdo-062978	Monodelphis domestica	87.64	0.00e+00	838.00
IUUC-Mmu-063439	Mus musculus	87.42	0.00e+00	840.00
IUUC-Mac-065129	Musa acuminata	47.77	9.00e-133	466.00
IUUC-Mpu-066548	Mustela putorius furo	79.95	0.00e+00	660.00
IUUC-Mlu-067660	Myotis lucifugus	88.31	0.00e+00	854.00
IUUC-Nfi-068455	Neosartorya fischeri	45.88	9.00e-111	393.00
IUUC-Ncr-068848	Neurospora crassa	42.29	6.00e-99	353.00
IUUC-Nle-069923	Nomascus leucogenys	88.99	0.00e+00	855.00
IUUC-Opr-070279	Ochotona princeps	75.79	2.00e-84	305.00
IUUC-Ont-072234	Oreochromis niloticus	81.12	0.00e+00	794.00
IUUC-Oan-073713	Ornithorhynchus anatinus	85.05	2.00e-103	367.00
IUUC-Ocu-073782	Oryctolagus cuniculus	89.66	0.00e+00	863.00
IUUC-Oba-075161	Oryza barthii	49.56	2.00e-130	458.00
IUUC-Obr-076868	Oryza brachyantha	49.34	2.00e-129	455.00
IUUC-Ogl-077062	Oryza glaberrima	49.56	2.00e-130	458.00
IUUC-Ogu-078308	Oryza glumaepatula	49.56	2.00e-130	458.00
IUUC-Oin-079378	Oryza indica	49.56	2.00e-130	458.00
IUUC-Olo-080638	Oryza longistaminata	47.35	4.00e-120	424.00
IUUC-Oni-082368	Oryza nivara	49.56	2.00e-130	458.00
IUUC-Opu-083628	Oryza punctata	49.56	2.00e-130	458.00
IUUC-Oru-085226	Oryza rufipogon	49.34	6.00e-130	457.00
IUUC-Osa-085368	Oryza sativa	45.63	4.00e-70	257.00
IUUC-Ola-086836	Oryzias latipes	81.57	0.00e+00	803.00
IUUC-Olu-087755	Ostreococcus lucimarinus	47.60	9.00e-128	449.00
IUUC-Oga-088170	Otolemur garnettii	90.11	0.00e+00	866.00
IUUC-Oar-089388	Ovis aries	87.42	0.00e+00	839.00
IUUC-Ptr-090494	Pan troglodytes	88.76	0.00e+00	855.00
IUUC-Pan-091697	Papio anubis	88.99	0.00e+00	858.00
IUUC-Psi-093916	Pelodiscus sinensis	88.54	0.00e+00	817.00
IUUC-Pno-095004	Phaeosphaeria nodorum	41.81	2.00e-100	358.00
IUUC-Ppa-095514	Physcomitrella patens	49.78	1.00e-139	489.00
IUUC-Pfo-097432	Poecilia formosa	79.67	0.00e+00	752.00
IUUC-Pab-098423	Pongo abelii	88.76	0.00e+00	855.00
IUUC-Pop-099649	Populus trichocarpa	48.78	2.00e-133	468.00
IUUC-Pca-100365	Procavia capensis	83.15	0.00e+00	762.00
IUUC-Ppe-101379	Prunus persica	47.11	2.00e-130	458.00
IUUC-Pva-102845	Pteropus vampyrus	88.31	0.00e+00	841.00
IUUC-Pgr-103469	Puccinia graminis	34.84	2.00e-85	309.00
IUUC-Ptt-103980	Puccinia triticina	36.29	3.00e-64	239.00
IUUC-Pte-104111	Pyrenophora teres	44.00	1.00e-108	386.00
IUUC-Pyt-104610	Pyrenophora triticirepentis	44.00	2.00e-108	385.00
IUUC-Rno-105082	Rattus norvegicus	87.42	0.00e+00	845.00
IUUC-Sce-106340	Saccharomyces cerevisiae	46.47	2.00e-125	442.00
IUUC-Sha-106584	Sarcophilus harrisii	87.19	0.00e+00	839.00
IUUC-Sja-107703	Schizosaccharomyces japonicus	44.27	2.00e-106	379.00
IUUC-Spo-108046	Schizosaccharomyces pombe	45.54	3.00e-109	388.00
IUUC-Ssl-108574	Sclerotinia sclerotiorum	43.74	7.00e-110	390.00
IUUC-Smo-109548	Selaginella moellendorffii	48.34	1.00e-133	469.00
IUUC-Sit-110242	Setaria italica	49.12	3.00e-127	448.00
IUUC-Sly-111762	Solanum lycopersicum	49.12	3.00e-130	457.00
IUUC-Stu-112156	Solanum tuberosum	48.45	2.00e-129	455.00
IUUC-Sbi-114739	Sorghum bicolor	50.44	5.00e-130	457.00
IUUC-Sre-114951	Sporisorium reilianum	39.00	2.00e-103	369.00
IUUC-Ssc-115510	Sus scrofa	88.76	0.00e+00	852.00
IUUC-Tgu-117234	Taeniopygia guttata	95.02	0.00e+00	799.00
IUUC-Tru-117986	Takifugu rubripes	78.84	0.00e+00	774.00
IUUC-Tsy-119252	Tarsius syrichta	83.88	0.00e+00	765.00
IUUC-Tni-119785	Tetraodon nigroviridis	79.62	0.00e+00	737.00
IUUC-Tca-121222	Theobroma cacao	46.90	1.00e-126	446.00
IUUC-Tre-122243	Trichoderma reesei	43.53	6.00e-105	374.00
IUUC-Tvi-122293	Trichoderma virens	43.08	1.00e-102	366.00
IUUC-Tae-125191	Triticum aestivum	48.01	8.00e-122	430.00
IUUC-Tur-126098	Triticum urartu	46.24	2.00e-110	392.00
IUUC-Tme-127200	Tuber melanosporum	47.31	1.00e-125	443.00
IUUC-Tbe-127568	Tupaia belangeri	89.38	3.00e-127	447.00
IUUC-Ttr-129185	Tursiops truncatus	79.10	0.00e+00	740.00
IUUC-Uma-129353	Ustilago maydis	39.40	2.00e-103	369.00
IUUC-Vda-129768	Verticillium dahliae	42.26	3.00e-101	361.00
IUUC-Vpa-130572	Vicugna pacos	88.76	0.00e+00	854.00
IUUC-Vvi-131555	Vitis vinifera	48.01	2.00e-129	455.00
IUUC-Xtr-132263	Xenopus tropicalis	82.14	0.00e+00	655.00
IUUC-Xma-133925	Xiphophorus maculatus	80.14	0.00e+00	758.00
IUUC-Yli-134384	Yarrowia lipolytica	45.64	2.00e-117	416.00
IUUC-Zma-135616	Zea mays	50.22	2.00e-128	451.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence