iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099233

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

STOMATAL CYTOKINESIS-DEFECTIVE 1 family protein

Genbank Nucleotide ID

CM000351

Gene Name

POPTRDRAFT_835082; POPTR_0015s03420g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0015s03420	POPTR_0015s03420.1	POPTR_0015s03420.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.70e-32	111.1	940	977
UBD/Beta-Prp	1.40e-63	216.0	839	1033

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgvllk 37
           gH + v+c++  s+ +++++++Dgt+k+WD+rt++++ 
   Q: 940  GHDAQVSCVRMlSGERVLTAAHDGTVKMWDVRTDTCVA 977
           8*********98889********************985 PP

UBD/Beta-Prp

   S: 45   lrslsgheaevtavkfspdgk............ilvtgseDrtikvwdls..tgkcvhtlkghedsvlslsfspsgdklvsGshdrtir 119
           +r l gh+++vta+ +  +++            ++++gs+D ++k+wd+s   ++   tlkgh+++v+++s+++   k+vsGs+d+ + 
   Q: 839  VRILRGHSGAVTALHCVTRREvwdlvgdredagFFISGSTDCMVKIWDPSirGSELRATLKGHTRTVRAISSDR--GKVVSGSDDQSVI 925
           677788888855555544444444444455557**************77666**********************..************* PP
   S: 120  vwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwd 208
           vwd +t q le  l+ghd+ v+cv++ + g  + +++ D+tv++Wd++t++++ t      ++v ++++d++   l+++++d   ++wd
   Q: 926  VWDKQTSQLLE-ELKGHDAQVSCVRMLS-GERVLTAAHDGTVKMWDVRTDTCVATVGR-CSSAVLCMEYDDSTGILAAAGRDAVANIWD 1011
           **********9.**************99.99*************************66.99**************************** PP
   S: 209  lqtgecvrtlnghtdnvksvrf 230
           +++g+ +++l ght++++s+r+
   Q: 1012 IRAGRQMHKLLGHTKWIRSIRM 1033
           *******************985 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MAGIFEYFVV CGLGPEMRTM DGNKGYHGMR VLYLPSLLDQ YPPDNHSLYP PPPPQLPTCV 60
LPAGVEFYPS GLDANDSSTF PKSYPIVLTE GDGSKIYVSC IAFRDPVSED IAEAYRIPPN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCAGGGA TCTTCGAGTA TTTTGTAGTG TGTGGGTTGG GTCCGGAGAT GAGAACTATG 60
GATGGAAACA AAGGATATCA TGGAATGCGA GTGTTGTATT TGCCTTCTCT ACTCGATCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR005112--dDENN_dom
IPR001194--DENN_dom
IPR020472--G-protein_beta_WD-40_rep
IPR005113--uDENN_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50947--DDENN
PS50211--DENN
PS50946--UDENN
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF02141--DENN
PF03456--uDENN
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00801--dDENN
SM00799--DENN
SM00800--uDENN
SM00320--WD40

KEGG

pop:POPTR_0015s03420g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005508	Arabidopsis lyrata	76.56	0.00e+00	1808.00
IUUC-Ath-007614	Arabidopsis thaliana	76.89	0.00e+00	1825.00
IUUC-Bdi-014863	Brachypodium distachyon	74.83	0.00e+00	1792.00
IUUC-Bol-015997	Brassica oleracea	76.81	0.00e+00	1796.00
IUUC-Bra-017065	Brassica rapa	76.81	0.00e+00	1796.00
IUUC-Gma-042682	Glycine max	80.53	0.00e+00	1942.00
IUUC-Lpe-051109	Leersia perrieri	74.94	0.00e+00	1701.00
IUUC-Mac-065420	Musa acuminata	78.14	0.00e+00	1864.00
IUUC-Oba-075961	Oryza barthii	72.21	0.00e+00	1347.00
IUUC-Obr-076806	Oryza brachyantha	75.83	0.00e+00	1813.00
IUUC-Ogu-078716	Oryza glumaepatula	71.55	0.00e+00	1652.00
IUUC-Oin-079809	Oryza indica	65.02	0.00e+00	1429.00
IUUC-Olo-080386	Oryza longistaminata	71.75	0.00e+00	1717.00
IUUC-Ome-081107	Oryza meridionalis	73.88	0.00e+00	1734.00
IUUC-Oni-082213	Oryza nivara	69.47	0.00e+00	1598.00
IUUC-Opu-083850	Oryza punctata	71.28	0.00e+00	1585.00
IUUC-Oru-084982	Oryza rufipogon	74.55	0.00e+00	1676.00
IUUC-Osa-086141	Oryza sativa	76.29	0.00e+00	1791.00
IUUC-Smo-109566	Selaginella moellendorffii	58.91	0.00e+00	1402.00
IUUC-Sit-109736	Setaria italica	75.64	0.00e+00	1826.00
IUUC-Sly-111483	Solanum lycopersicum	80.82	0.00e+00	1923.00
IUUC-Sbi-113820	Sorghum bicolor	75.83	0.00e+00	1821.00
IUUC-Tca-121657	Theobroma cacao	85.84	0.00e+00	2011.00
IUUC-Tae-124598	Triticum aestivum	73.68	0.00e+00	1783.00
IUUC-Tur-126080	Triticum urartu	72.72	0.00e+00	1154.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence