iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ncr-068704

Ensembl Protein ID

EAA27379

UniProt Accession

Q1K578; Q1K578_NEUCR

Genbank Protein ID

EAA27379.2

Protein Name

RNA polymerase TFIIH complex subunit Ssl1

Genbank Nucleotide ID

CM002237

Gene Name

NCU01831

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
NCU01831	EAA27379	EAA27379

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	47.51	5.00e-108	386.00	IUUC-Sce-106434

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Neurospora crassa

Protein Sequence
(Fasta)

MADSDGEYAS DDELKRHGKR TADGRSKQTK ASWEDVKRSW DTVLETADSG LSIAEIREAE 60
KRRRLLRDTT PLQRGIIRHL MLVLDMSFAM ADKDLLPNRY RVVLNNAIGF VREYFEQNPI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTGCAGTCC AGTAAACATT TCCGGCTTCC ACCACACACC ACGAACCTTT GTTCAGCTTG 60
TGCATTCAAC GTCGTCGCGT ATCCCCTTTT CTCCATTCTT TCTTATTTCT CTCCGGCACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR007198--Ssl1-like
IPR004595--TFIIH_C1-like_dom
IPR012170--TFIIH_SSL1/p44
IPR002035--VWF_A
IPR013087--Znf_C2H2_type
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50234--VWFA
PS00028--ZINC_FINGER_C2H2_1
PS50157--ZINC_FINGER_C2H2_2

Pfam

PF07975--C1_4
PF04056--Ssl1

SMART

SM01047--C1_4
SM00327--VWA

Gene Ontology

GO:0000439--C:core TFIIH complex
GO:0005829--C:cytosol
GO:0005675--C:holo TFIIH complex
GO:0003676--F:nucleic acid binding
GO:0008270--F:zinc ion binding
GO:0006289--P:nucleotide-excision repair
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0006351--P:transcription, DNA-templated

KEGG

ncr:NCU01831

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000536	Aegilops tauschii	38.33	1.00e-49	188.00
IUUC-Aml-002041	Ailuropoda melanoleuca	36.98	8.00e-67	245.00
IUUC-Atr-003056	Amborella trichopoda	38.80	9.00e-70	254.00
IUUC-Apl-003464	Anas platyrhynchos	35.79	1.00e-64	238.00
IUUC-Aca-004745	Anolis carolinensis	37.89	2.00e-65	240.00
IUUC-Aly-005559	Arabidopsis lyrata	38.81	4.00e-77	280.00
IUUC-Ath-007556	Arabidopsis thaliana	38.81	4.00e-77	279.00
IUUC-Ago-007851	Ashbya gossypii	49.28	8.00e-109	385.00
IUUC-Acl-008100	Aspergillus clavatus	54.80	3.00e-135	473.00
IUUC-Afl-008649	Aspergillus flavus	62.07	3.00e-24	100.00
IUUC-Afu-009066	Aspergillus fumigatus	53.26	1.00e-136	477.00
IUUC-Ani-009372	Aspergillus nidulans	53.83	2.00e-134	470.00
IUUC-Ang-009726	Aspergillus niger	53.70	6.00e-139	485.00
IUUC-Aor-010135	Aspergillus oryzae	52.61	4.00e-130	456.00
IUUC-Ate-010399	Aspergillus terreus	54.23	4.00e-48	182.00
IUUC-Ame-011618	Astyanax mexicanus	34.57	1.00e-69	254.00
IUUC-Bgr-012154	Blumeria graminis	55.58	2.00e-151	526.00
IUUC-Bta-012353	Bos taurus	36.98	6.00e-70	256.00
IUUC-Bci-013932	Botrytis cinerea	62.92	9.00e-157	544.00
IUUC-Bdi-014391	Brachypodium distachyon	37.83	3.00e-75	273.00
IUUC-Bol-015128	Brassica oleracea	39.23	3.00e-79	286.00
IUUC-Bra-017932	Brassica rapa	39.00	9.00e-79	285.00
IUUC-Cel-018649	Caenorhabditis elegans	33.59	5.00e-55	206.00
IUUC-Cja-018776	Callithrix jacchus	36.74	1.00e-65	241.00
IUUC-Cfa-020584	Canis familiaris	37.21	4.00e-67	246.00
IUUC-Cpo-021300	Cavia porcellus	37.21	1.00e-67	248.00
IUUC-Cre-022657	Chlamydomonas reinhardtii	35.37	6.00e-60	222.00
IUUC-Csa-024092	Chlorocebus sabaeus	36.98	7.00e-67	245.00
IUUC-Cho-024919	Choloepus hoffmanni	38.81	9.00e-33	131.00
IUUC-Cin-025386	Ciona intestinalis	37.03	1.00e-69	254.00
IUUC-Csv-026295	Ciona savignyi	36.26	8.00e-68	248.00
IUUC-Cgl-026612	Colletotrichum gloeosporioides	60.82	1.00e-161	560.00
IUUC-Cne-026956	Cryptococcus neoformans	34.16	6.00e-74	269.00
IUUC-Cme-027150	Cyanidioschyzon merolae	33.78	2.00e-46	178.00
IUUC-Dre-027962	Danio rerio	34.65	1.00e-72	265.00
IUUC-Dno-029979	Dasypus novemcinctus	40.97	2.00e-60	224.00
IUUC-Dse-031405	Dothistroma septosporum	52.30	1.00e-122	431.00
IUUC-Dme-031710	Drosophila melanogaster	33.33	6.00e-64	236.00
IUUC-Ete-032631	Echinops telfairi	34.17	4.00e-60	223.00
IUUC-Eca-034054	Equus caballus	39.60	3.00e-68	250.00
IUUC-Fca-035724	Felis catus	34.72	4.00e-61	226.00
IUUC-Fal-036987	Ficedula albicollis	35.88	3.00e-73	266.00
IUUC-Fox-037692	Fusarium oxysporum	61.18	2.00e-173	599.00
IUUC-Fso-038442	Fusarium solani	62.85	3.00e-162	563.00
IUUC-Gmo-039273	Gadus morhua	34.56	2.00e-70	257.00
IUUC-Ggr-040009	Gaeumannomyces graminis	53.24	9.00e-145	504.00
IUUC-Gga-041089	Gallus gallus	35.65	3.00e-73	267.00
IUUC-Gac-041978	Gasterosteus aculeatus	33.95	7.00e-66	242.00
IUUC-Gma-043371	Glycine max	39.24	1.00e-81	294.00
IUUC-Hsa-046001	Homo sapiens	37.21	3.00e-67	246.00
IUUC-Itr-048355	Ictidomys tridecemlineatus	37.21	1.00e-74	271.00
IUUC-Kpa-049235	Komagataella pastoris	46.28	1.00e-103	367.00
IUUC-Lch-049926	Latimeria chalumnae	35.12	2.00e-68	251.00
IUUC-Lpe-051352	Leersia perrieri	38.46	9.00e-74	268.00
IUUC-Loc-051987	Lepisosteus oculatus	34.65	5.00e-70	256.00
IUUC-Lma-053171	Leptosphaeria maculans	45.49	3.00e-109	387.00
IUUC-Laf-054372	Loxodonta africana	36.74	2.00e-69	254.00
IUUC-Mcc-055108	Macaca mulatta	37.21	3.00e-67	246.00
IUUC-Mor-056990	Magnaporthe oryzae	56.15	2.00e-148	517.00
IUUC-Mtr-058401	Medicago truncatula	39.01	2.00e-80	290.00
IUUC-Mla-059186	Melampsora laricipopulina	41.69	7.00e-88	315.00
IUUC-Mvi-060262	Microbotryum violaceum	37.50	1.00e-83	301.00
IUUC-Mmr-061688	Microcebus murinus	34.99	5.00e-59	219.00
IUUC-Mdo-062154	Monodelphis domestica	36.72	2.00e-71	261.00
IUUC-Mmu-064232	Mus musculus	36.66	7.00e-66	242.00
IUUC-Mac-065091	Musa acuminata	38.46	1.00e-75	275.00
IUUC-Mpu-066747	Mustela putorius furo	34.48	5.00e-55	206.00
IUUC-Mlu-067799	Myotis lucifugus	34.41	5.00e-56	209.00
IUUC-Nfi-068371	Neosartorya fischeri	41.58	2.00e-30	122.00
IUUC-Nle-069054	Nomascus leucogenys	37.21	5.00e-66	242.00
IUUC-Ont-071624	Oreochromis niloticus	34.19	7.00e-69	252.00
IUUC-Oan-072898	Ornithorhynchus anatinus	34.88	2.00e-69	254.00
IUUC-Ocu-074289	Oryctolagus cuniculus	37.94	4.00e-53	199.00
IUUC-Oba-075985	Oryza barthii	39.01	7.00e-72	262.00
IUUC-Obr-076887	Oryza brachyantha	39.18	1.00e-75	275.00
IUUC-Ogl-077823	Oryza glaberrima	39.01	7.00e-72	262.00
IUUC-Ogu-078412	Oryza glumaepatula	42.68	7.00e-65	239.00
IUUC-Oin-079569	Oryza indica	40.28	1.00e-50	192.00
IUUC-Olo-080249	Oryza longistaminata	40.00	2.00e-50	191.00
IUUC-Ome-081240	Oryza meridionalis	42.99	1.00e-64	239.00
IUUC-Oni-082152	Oryza nivara	42.68	2.00e-64	238.00
IUUC-Opu-084011	Oryza punctata	38.59	7.00e-72	262.00
IUUC-Oru-084719	Oryza rufipogon	40.99	9.00e-65	239.00
IUUC-Osa-085286	Oryza sativa	39.66	5.00e-73	266.00
IUUC-Ola-086525	Oryzias latipes	32.63	2.00e-53	201.00
IUUC-Olu-087876	Ostreococcus lucimarinus	37.30	5.00e-53	199.00
IUUC-Oga-088125	Otolemur garnettii	38.75	6.00e-68	249.00
IUUC-Oar-089701	Ovis aries	36.98	8.00e-70	255.00
IUUC-Ptr-091218	Pan troglodytes	36.98	5.00e-67	246.00
IUUC-Pan-091755	Papio anubis	37.21	3.00e-67	246.00
IUUC-Psi-094061	Pelodiscus sinensis	36.51	9.00e-73	265.00
IUUC-Pma-094430	Petromyzon marinus	39.91	1.00e-47	180.00
IUUC-Pno-094900	Phaeosphaeria nodorum	39.09	2.00e-73	268.00
IUUC-Ppa-095895	Physcomitrella patens	41.29	8.00e-87	311.00
IUUC-Pfo-096297	Poecilia formosa	37.35	1.00e-44	171.00
IUUC-Pab-097717	Pongo abelii	37.21	3.00e-67	246.00
IUUC-Pop-098938	Populus trichocarpa	39.20	7.00e-77	279.00
IUUC-Pca-100389	Procavia capensis	40.07	7.00e-56	209.00
IUUC-Ppe-102045	Prunus persica	40.19	1.00e-77	281.00
IUUC-Pva-102357	Pteropus vampyrus	36.48	3.00e-27	112.00
IUUC-Pgr-103399	Puccinia graminis	42.59	5.00e-93	333.00
IUUC-Ptt-103872	Puccinia triticina	43.29	5.00e-94	336.00
IUUC-Pte-104092	Pyrenophora teres	48.63	3.00e-99	353.00
IUUC-Pyt-104669	Pyrenophora triticirepentis	46.31	5.00e-99	352.00
IUUC-Rno-105515	Rattus norvegicus	37.12	1.00e-68	251.00
IUUC-Sce-106434	Saccharomyces cerevisiae	49.04	2.00e-112	397.00
IUUC-Sha-106808	Sarcophilus harrisii	36.72	3.00e-71	260.00
IUUC-Sja-107995	Schizosaccharomyces japonicus	48.86	4.00e-113	399.00
IUUC-Spo-108044	Schizosaccharomyces pombe	50.72	9.00e-117	411.00
IUUC-Smo-109581	Selaginella moellendorffii	39.10	3.00e-71	260.00
IUUC-Sit-110704	Setaria italica	38.30	5.00e-74	269.00
IUUC-Sly-110990	Solanum lycopersicum	40.41	2.00e-66	244.00
IUUC-Stu-112542	Solanum tuberosum	39.38	8.00e-39	151.00
IUUC-Sar-113766	Sorex araneus	39.50	2.00e-59	221.00
IUUC-Sbi-114016	Sorghum bicolor	38.77	3.00e-75	273.00
IUUC-Sre-115099	Sporisorium reilianum	43.21	2.00e-100	357.00
IUUC-Ssc-115277	Sus scrofa	39.60	4.00e-66	243.00
IUUC-Tgu-117343	Taeniopygia guttata	35.76	1.00e-73	268.00
IUUC-Tru-118397	Takifugu rubripes	34.42	3.00e-67	246.00
IUUC-Tni-120272	Tetraodon nigroviridis	34.57	6.00e-67	246.00
IUUC-Tca-121514	Theobroma cacao	39.07	1.00e-80	291.00
IUUC-Tre-121990	Trichoderma reesei	63.01	7.00e-160	555.00
IUUC-Tvi-122504	Trichoderma virens	68.88	5.00e-153	531.00
IUUC-Tae-123153	Triticum aestivum	37.71	1.00e-73	268.00
IUUC-Tur-126693	Triticum urartu	45.35	2.00e-62	231.00
IUUC-Tme-127011	Tuber melanosporum	58.02	1.00e-137	481.00
IUUC-Tbe-127939	Tupaia belangeri	36.98	4.00e-66	243.00
IUUC-Ttr-128889	Tursiops truncatus	32.33	3.00e-55	207.00
IUUC-Uma-129450	Ustilago maydis	42.35	8.00e-99	352.00
IUUC-Vda-129919	Verticillium dahliae	62.64	2.00e-146	510.00
IUUC-Vvi-130928	Vitis vinifera	40.37	6.00e-78	282.00
IUUC-Xtr-131891	Xenopus tropicalis	33.79	2.00e-64	237.00
IUUC-Xma-133260	Xiphophorus maculatus	36.95	5.00e-44	169.00
IUUC-Yli-134578	Yarrowia lipolytica	46.80	1.00e-112	398.00
IUUC-Zma-135427	Zea mays	38.77	1.00e-74	271.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence