iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ogu-079022

Ensembl Protein ID

OGLUM10G14270.1

UniProt Accession

A0A0E0BC63; A0A0E0BC63_9ORYZ

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OGLUM10G14270	OGLUM10G14270.1	OGLUM10G14270.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.30e-37	125.6	184	219
UBD/Beta-Prp	2.40e-53	182.4	14	255

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H+++++c++f +   ll++Gs D+t+k WDl t+ l
   Q: 184  HEGPINCVDFhPHeFLLATGSADKTVKFWDLETFEL 219
           9*********9776789**************99876 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsl 100
           +h s ++cvkf  + +++l+tg++d+++ +w + +++ + slsg +++v +v+f++++ ++  g++ +tik+w+++  k v+t++gh +s  sl
   Q: 14   AHASDVNCVKFgRKTSRILITGGEDQKVNLWAIGKPSSILSLSGLTSPVESVSFDSSEAMIGAGASSGTIKIWNVDEAKVVRTFTGHRSSCASL 107
           5666677788888888888888888888888888888888888888888888888888888888888888888888888888888888888888 PP
   S: 101  sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngke 194
           +f+p g++++sGs+d   ++wd++++ c++ t +gh++ + ++++ pdg+ +vsG+ D+ v++Wdl  gkll++++  h++++++++f++  + 
   Q: 108  DFHPFGEFFASGSSDTNMKIWDMRKKGCIH-TYKGHTRRIDVLRFTPDGRWIVSGGSDNSVKIWDLTAGKLLHDFRN-HEGPINCVDFHPHEFL 199
           888888888888888888888888888888.8888888888888888888888888888888888888888888886.8888888888888888 PP
   S: 195  lvsgsldgtvklwdlqtgec........vrtlnghtdnvksvrfspnderlvsgssD 243
           l++gs d+tvk+wdl+t e          r++    + v+s+ f ++++ l +g  +
   Q: 200  LATGSADKTVKFWDLETFELigssgpenSREYFVPASVVRSMTFNKDGKSLFCGL-H 255
           8888888888888888555444444444677777778888888888888887774.3 PP

Organism

Oryza glumaepatula

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MATKRAYKLQ EFVAHASDVN CVKFGRKTSR ILITGGEDQK VNLWAIGKPS SILSLSGLTS 60
PVESVSFDSS EAMIGAGASS GTIKIWNVDE AKVVRTFTGH RSSCASLDFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCACCA AGCGCGCGTA CAAGCTCCGT ATCCTCGATT TGGGAGTTTT AGATTAAATT 60
TGAGTTCTTT TTTTGGGTCG AGTTGTTCTT GCCCTGCCTG CTTATCGTTG TATGTAATCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000873	Aegilops tauschii	56.65	0.00e+00	904.00
IUUC-Aml-002187	Ailuropoda melanoleuca	48.24	6.00e-95	341.00
IUUC-Atr-002899	Amborella trichopoda	66.58	2.00e-151	529.00
IUUC-Bta-012527	Bos taurus	48.88	6.00e-98	351.00
IUUC-Bdi-014552	Brachypodium distachyon	65.82	0.00e+00	1102.00
IUUC-Bol-015242	Brassica oleracea	59.02	3.00e-147	515.00
IUUC-Bra-017390	Brassica rapa	63.64	2.00e-148	519.00
IUUC-Cja-019706	Callithrix jacchus	48.88	8.00e-98	350.00
IUUC-Cfa-020139	Canis familiaris	43.98	3.00e-93	335.00
IUUC-Cpo-021710	Cavia porcellus	49.20	8.00e-99	353.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	41.38	3.00e-76	279.00
IUUC-Csa-023546	Chlorocebus sabaeus	49.50	2.00e-95	342.00
IUUC-Cin-025156	Ciona intestinalis	43.14	2.00e-82	300.00
IUUC-Csv-025962	Ciona savignyi	45.42	1.00e-82	299.00
IUUC-Dno-029314	Dasypus novemcinctus	49.20	1.00e-97	350.00
IUUC-Dor-030482	Dipodomys ordii	48.88	2.00e-98	352.00
IUUC-Eca-034143	Equus caballus	48.56	6.00e-95	341.00
IUUC-Fca-035924	Felis catus	49.20	3.00e-98	352.00
IUUC-Fal-037387	Ficedula albicollis	48.87	1.00e-95	343.00
IUUC-Gmo-038692	Gadus morhua	46.93	1.00e-94	339.00
IUUC-Gga-040597	Gallus gallus	47.57	1.00e-94	340.00
IUUC-Ggo-044761	Gorilla gorilla	48.88	1.00e-97	350.00
IUUC-Hsa-045698	Homo sapiens	48.88	6.00e-98	351.00
IUUC-Hvu-047781	Hordeum vulgare	63.90	0.00e+00	1059.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	48.88	4.00e-98	352.00
IUUC-Lch-049674	Latimeria chalumnae	49.51	8.00e-101	360.00
IUUC-Lpe-051597	Leersia perrieri	85.41	0.00e+00	807.00
IUUC-Loc-052623	Lepisosteus oculatus	48.79	7.00e-92	330.00
IUUC-Laf-054587	Loxodonta africana	48.88	1.00e-97	350.00
IUUC-Mcc-055851	Macaca mulatta	48.88	1.00e-97	350.00
IUUC-Meu-056704	Macropus eugenii	49.84	1.00e-98	353.00
IUUC-Mmr-061154	Microcebus murinus	48.88	7.00e-98	350.00
IUUC-Mdo-062365	Monodelphis domestica	49.52	1.00e-97	350.00
IUUC-Mmu-063754	Mus musculus	48.88	3.00e-98	352.00
IUUC-Mac-064439	Musa acuminata	59.20	2.00e-158	552.00
IUUC-Mpu-066245	Mustela putorius furo	49.52	2.00e-98	352.00
IUUC-Mlu-067692	Myotis lucifugus	49.03	6.00e-97	347.00
IUUC-Nle-070051	Nomascus leucogenys	48.56	1.00e-96	347.00
IUUC-Opr-070855	Ochotona princeps	48.88	2.00e-97	349.00
IUUC-Oan-073293	Ornithorhynchus anatinus	49.83	1.00e-94	340.00
IUUC-Ocu-074644	Oryctolagus cuniculus	48.88	3.00e-98	352.00
IUUC-Oba-075845	Oryza barthii	94.44	0.00e+00	1671.00
IUUC-Obr-076798	Oryza brachyantha	84.00	0.00e+00	1512.00
IUUC-Oin-080135	Oryza indica	97.60	0.00e+00	1731.00
IUUC-Olo-080665	Oryza longistaminata	97.68	0.00e+00	1526.00
IUUC-Ome-081884	Oryza meridionalis	97.46	0.00e+00	1707.00
IUUC-Oni-082726	Oryza nivara	94.86	0.00e+00	1667.00
IUUC-Opu-083637	Oryza punctata	95.31	0.00e+00	1711.00
IUUC-Oru-085123	Oryza rufipogon	97.49	0.00e+00	1727.00
IUUC-Osa-086267	Oryza sativa	97.49	0.00e+00	1727.00
IUUC-Oga-087964	Otolemur garnettii	48.88	6.00e-98	351.00
IUUC-Oar-089483	Ovis aries	48.56	6.00e-96	344.00
IUUC-Ptr-091387	Pan troglodytes	48.88	6.00e-98	351.00
IUUC-Pan-092623	Papio anubis	48.88	1.00e-97	350.00
IUUC-Psi-093830	Pelodiscus sinensis	49.48	8.00e-93	334.00
IUUC-Ppa-095379	Physcomitrella patens	59.51	4.00e-133	468.00
IUUC-Pab-097564	Pongo abelii	48.88	2.00e-97	349.00
IUUC-Pca-100357	Procavia capensis	54.37	2.00e-74	273.00
IUUC-Ppe-101237	Prunus persica	58.65	3.00e-158	551.00
IUUC-Pva-102397	Pteropus vampyrus	44.66	6.00e-85	307.00
IUUC-Rno-105349	Rattus norvegicus	48.88	3.00e-98	352.00
IUUC-Smo-109379	Selaginella moellendorffii	57.64	7.00e-138	484.00
IUUC-Sit-109837	Setaria italica	65.49	0.00e+00	1127.00
IUUC-Stu-112462	Solanum tuberosum	66.94	5.00e-143	500.00
IUUC-Tgu-117461	Taeniopygia guttata	48.87	2.00e-96	345.00
IUUC-Tsy-119036	Tarsius syrichta	54.47	6.00e-38	151.00
IUUC-Tni-120903	Tetraodon nigroviridis	44.58	5.00e-84	304.00
IUUC-Tae-123176	Triticum aestivum	62.32	0.00e+00	1028.00
IUUC-Tbe-128071	Tupaia belangeri	31.48	2.00e-30	126.00
IUUC-Ttr-128172	Tursiops truncatus	48.88	3.00e-98	352.00
IUUC-Xtr-132915	Xenopus tropicalis	49.35	2.00e-94	339.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence