iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114533

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RING-type E3 ubiquitin transferase

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G249100

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g028890	Sb04g028890.1	Sb04g028890.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.60e-33	113.7	263	335

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +pe+f+CpIslelMrdPv++++G+ty+r+ I++w++ g++tcP+t+q+l++  l+Pn++lr+li +wcee+++
   Q: 263  IPEDFRCPISLELMRDPVIVSTGQTYERAFIQRWIDCGNRTCPKTQQKLQNLALTPNYVLRSLILQWCEEKGI 335
           8********************************************************************9986 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MATAEAAAEI VREIAAVGAA DLAAAAEPLR TDCLRLARKV SLLSHLVAEV ADAGEGDAAA 60
AAWVRELVRA LEAARRFVAL GRTPAPAPAA AGASDQDAIC KNTALQFKYV TWQLQAALAN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTCCCCTCCA TCCCTTCCAT TCCATCCCCC AAGCCGAGCC GCGCCGCGCC GGAGGCTGGA 60
GCCCATCGAG AAGCGGCCGG CACGGCACTT GCCTTTTCTT TAATCCGGGA CCCCGCCCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

sbi:SORBI_04g028890

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000977	Aegilops tauschii	84.04	0.00e+00	872.00
IUUC-Aly-005733	Arabidopsis lyrata	51.39	2.00e-147	515.00
IUUC-Ath-007555	Arabidopsis thaliana	50.40	7.00e-153	533.00
IUUC-Bdi-014341	Brachypodium distachyon	81.51	0.00e+00	946.00
IUUC-Bol-015936	Brassica oleracea	49.92	3.00e-161	560.00
IUUC-Bra-016825	Brassica rapa	49.76	7.00e-162	563.00
IUUC-Gma-043730	Glycine max	54.91	3.00e-169	587.00
IUUC-Hvu-047676	Hordeum vulgare	90.60	0.00e+00	642.00
IUUC-Lpe-051513	Leersia perrieri	81.82	0.00e+00	945.00
IUUC-Mtr-058156	Medicago truncatula	52.10	2.00e-166	578.00
IUUC-Mac-065650	Musa acuminata	52.85	3.00e-171	594.00
IUUC-Oba-075045	Oryza barthii	81.76	0.00e+00	947.00
IUUC-Obr-076820	Oryza brachyantha	87.61	0.00e+00	795.00
IUUC-Ogl-077779	Oryza glaberrima	82.14	0.00e+00	956.00
IUUC-Ogu-078572	Oryza glumaepatula	82.14	0.00e+00	957.00
IUUC-Oin-079487	Oryza indica	81.98	0.00e+00	953.00
IUUC-Olo-080348	Oryza longistaminata	84.01	0.00e+00	899.00
IUUC-Ome-081282	Oryza meridionalis	81.82	0.00e+00	949.00
IUUC-Oni-083061	Oryza nivara	81.98	0.00e+00	953.00
IUUC-Opu-083297	Oryza punctata	82.63	0.00e+00	928.00
IUUC-Oru-084442	Oryza rufipogon	82.14	0.00e+00	956.00
IUUC-Osa-085919	Oryza sativa	82.14	0.00e+00	956.00
IUUC-Pop-099907	Populus trichocarpa	53.35	5.00e-172	597.00
IUUC-Ppe-101146	Prunus persica	52.52	5.00e-163	566.00
IUUC-Sit-110422	Setaria italica	93.14	0.00e+00	1011.00
IUUC-Sly-111534	Solanum lycopersicum	52.27	8.00e-159	553.00
IUUC-Stu-112138	Solanum tuberosum	53.07	9.00e-162	562.00
IUUC-Tca-121496	Theobroma cacao	53.69	8.00e-172	596.00
IUUC-Tae-125409	Triticum aestivum	79.02	0.00e+00	840.00
IUUC-Tur-126634	Triticum urartu	82.23	0.00e+00	826.00
IUUC-Vvi-131185	Vitis vinifera	53.26	2.00e-171	595.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence