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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007003
UUCD1 version UUC-ArT-01146
Ensembl Protein ID AT4G05410.1
UniProt Accession Q9M0V4; YAO_ARATH
Genbank Protein ID CAB81083.1; AEE82516.1; AAM20668.1; AAN15644.1
Protein Name U3 snoRNP-associated protein-like YAO
Genbank Nucleotide ID AL161503; CP002687; AY099817; BT000325
Gene Name YAO; At4g05410
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT4G05410 AT4G05410.1 AT4G05410.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 4.60e-26 90.7 262 294
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlr 31
           gH + v+cl+f   +  l sGs D t+kvW++ 
   Q: 262  GHRNTVSCLCFryGTSELYSGSFDRTVKVWNVE 294
           8**********9733689*************85 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis. Plays a critical role in embryo sac development and gametic cell fate. Required for the correct positioning of the first division plane of zygote. May function during early embryogenesis (PubMed:20699009).
 Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). Essential for embryogenesis. Plays a critical role in embryo sac development and gametic cell fate. Required for the correct positioning of the first division plane of zygote. May function during early embryogenesis (PubMed:20699009).
Protein Sequence
(Fasta)
MKYNNEKKKG GSFKRGGKKG SNERDPFFEE EPKKRRKVSY DDDDIESVDS DAEENGFTGG 60
DEDGRRVDGE VEDEDEFADE TAGEKRKRLA EEMLNRRREA MRREREEADN DDDDDEDDDE 120
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Protein Fasta Sequence


>IUUC-Ath-007003|E3,WD_repeat|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
AAATAAACAA AATCGTTTTC CAGCTTCTTC CGTCGCCACT AAACCCTGAG GCTAAACCTA 60
GACGAGTCAA AGTGTAAAAT CGTTAAACCC TAAGAGGGAG TGAGAGAGAG AAGAATGAAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007003|E3,WD_repeat|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0694--RNA-binding
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005730--C:nucleolus
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0060321--P:acceptance of pollen
GO:0009793--P:embryo development ending in seed dormancy
GO:0009553--P:embryo sac development
GO:0006364--P:rRNA processing
KEGG ath:AT4G05410
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000586 Aegilops tauschii 51.80 1.00e-111 396.00
IUUC-Atr-002824 Amborella trichopoda 57.74 3.00e-124 438.00
IUUC-Aly-005535 Arabidopsis lyrata 89.38 0.00e+00 756.00
IUUC-Ago-007710 Ashbya gossypii 25.87 1.00e-35 143.00
IUUC-Bta-012698 Bos taurus 38.61 2.00e-69 256.00
IUUC-Bdi-014790 Brachypodium distachyon 53.55 3.00e-122 431.00
IUUC-Bol-016068 Brassica oleracea 78.56 0.00e+00 662.00
IUUC-Bra-017410 Brassica rapa 82.51 4.00e-179 620.00
IUUC-Cel-018616 Caenorhabditis elegans 32.53 1.00e-44 173.00
IUUC-Cfa-020961 Canis familiaris 36.97 1.00e-67 249.00
IUUC-Cin-025670 Ciona intestinalis 34.11 3.00e-68 251.00
IUUC-Csv-026172 Ciona savignyi 34.34 1.00e-65 242.00
IUUC-Dno-029684 Dasypus novemcinctus 34.44 6.00e-47 180.00
IUUC-Eca-033735 Equus caballus 38.61 7.00e-69 253.00
IUUC-Fca-036193 Felis catus 39.10 5.00e-70 257.00
IUUC-Hvu-047173 Hordeum vulgare 55.67 2.00e-127 448.00
IUUC-Lpe-051651 Leersia perrieri 54.01 3.00e-125 441.00
IUUC-Meu-055943 Macropus eugenii 37.97 1.00e-67 249.00
IUUC-Mtr-058209 Medicago truncatula 52.71 7.00e-144 503.00
IUUC-Mla-059043 Melampsora laricipopulina 26.51 8.00e-35 141.00
IUUC-Mdo-063026 Monodelphis domestica 39.30 3.00e-72 265.00
IUUC-Ncr-068679 Neurospora crassa 28.82 5.00e-37 148.00
IUUC-Oan-073465 Ornithorhynchus anatinus 35.81 3.00e-51 195.00
IUUC-Oba-075607 Oryza barthii 56.25 7.00e-114 403.00
IUUC-Obr-076581 Oryza brachyantha 53.42 5.00e-42 163.00
IUUC-Ogl-077387 Oryza glaberrima 55.41 9.00e-122 429.00
IUUC-Ogu-078323 Oryza glumaepatula 56.14 1.00e-119 422.00
IUUC-Oin-079977 Oryza indica 49.41 8.00e-91 327.00
IUUC-Olo-080857 Oryza longistaminata 55.87 4.00e-119 420.00
IUUC-Ome-081568 Oryza meridionalis 56.14 2.00e-119 421.00
IUUC-Oni-082685 Oryza nivara 55.87 1.00e-125 442.00
IUUC-Opu-084049 Oryza punctata 56.14 7.00e-120 423.00
IUUC-Oru-084348 Oryza rufipogon 55.87 1.00e-125 442.00
IUUC-Osa-086076 Oryza sativa 55.87 1.00e-125 442.00
IUUC-Oar-090430 Ovis aries 38.61 2.00e-69 255.00
IUUC-Ppe-101999 Prunus persica 63.80 1.00e-151 529.00
IUUC-Pva-103046 Pteropus vampyrus 38.24 6.00e-69 253.00
IUUC-Sce-106329 Saccharomyces cerevisiae 27.08 2.00e-30 126.00
IUUC-Sha-106941 Sarcophilus harrisii 39.30 6.00e-72 263.00
IUUC-Sit-109694 Setaria italica 57.14 3.00e-130 457.00
IUUC-Sly-111294 Solanum lycopersicum 58.81 3.00e-139 487.00
IUUC-Stu-112747 Solanum tuberosum 59.33 7.00e-141 493.00
IUUC-Sbi-114694 Sorghum bicolor 57.44 2.00e-133 468.00
IUUC-Sre-114937 Sporisorium reilianum 27.20 1.00e-43 170.00
IUUC-Ssc-116127 Sus scrofa 38.03 2.00e-68 252.00
IUUC-Tca-121724 Theobroma cacao 55.88 6.00e-143 500.00
IUUC-Tae-125579 Triticum aestivum 55.41 4.00e-127 447.00
IUUC-Tur-126548 Triticum urartu 55.15 1.00e-126 446.00
IUUC-Uma-129472 Ustilago maydis 27.31 4.00e-38 152.00
IUUC-Vvi-131683 Vitis vinifera 63.04 8.00e-150 523.00
Created Date 25-Jun-2017

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