iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Aly-005805

Ensembl Protein ID

scaffold_100381.1

UniProt Accession

D7KDC5; D7KDC5_ARALL

Genbank Protein ID

EFH68461.1

Protein Name

Auxin-responsive protein

Genbank Nucleotide ID

GL348713

Gene Name

SHY2; ARALYDRAFT_887587

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
scaffold_100381.1	scaffold_100381.1	scaffold_100381.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	1.60e-17	64.1	94	179

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 2    vrvkvsykgeirsfaldlekpgkfedLlkavrt.lt..........elknsevalkYeDedGDlvtlksDedldkavsllaskksllrlliq 82
           + vkvs++g+++++++dl+ + ++++Llka++  ++          ++k+s++ ++YeD+dGD++ l +D+++++++        ++rl+i+
   Q: 94   IYVKVSMDGAPYLRKIDLSCYKGYSELLKALEVmFKfsvgeyferdGYKGSDFVPTYEDKDGDWM-LIGDVPWEMFIC------TCKRLRIM 178
           78*******************************6448899999999*******************.************......9******9 PP
   S: 83   k 83
           k
   Q: 179  K 179
           8 PP

Organism

Arabidopsis lyrata

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Protein Sequence
(Fasta)

MDEFVNLKET ELRLGLPGTD NVCEEKESII SCCNNNNKRA LSSDNEKENE SSSRKTETSP 60
PRKAQIVGWP PVRSYRKNNI QTKKNESEHE GQGIYVKVSM DGAPYLRKID LSCYKGYSEL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCCGCAAT TCTTGAAGAA ATGGATGAGT TTGTTAACCT CAAGGAAACG GAGCTGAGGC 60
TGGGATTACC AGGAACAGAC AATGTTTGTG AAGAAAAAGA GAGCATTATT TCTTGCTGTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0044212--F:transcription regulatory region DNA binding
GO:0009734--P:auxin-activated signaling pathway
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG

aly:ARALYDRAFT_887587

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000969	Aegilops tauschii	44.88	8.00e-38	149.00
IUUC-Ath-007370	Arabidopsis thaliana	94.21	2.00e-104	371.00
IUUC-Bol-015408	Brassica oleracea	81.15	1.00e-86	310.00
IUUC-Bra-017254	Brassica rapa	82.63	3.00e-89	319.00
IUUC-Csa-023469	Chlorocebus sabaeus	40.00	1.20e+00	26.20
IUUC-Mtr-058557	Medicago truncatula	58.76	3.00e-59	220.00
IUUC-Mac-064820	Musa acuminata	56.70	7.00e-55	205.00
IUUC-Ncr-068890	Neurospora crassa	37.74	2.30e-01	29.30
IUUC-Oba-075141	Oryza barthii	50.75	3.00e-46	177.00
IUUC-Ogu-078093	Oryza glumaepatula	49.25	3.00e-45	173.00
IUUC-Oin-079780	Oryza indica	48.76	4.00e-44	169.00
IUUC-Oni-083078	Oryza nivara	48.76	4.00e-44	169.00
IUUC-Oru-084991	Oryza rufipogon	48.76	4.00e-44	169.00
IUUC-Osa-085321	Oryza sativa	48.76	4.00e-44	169.00
IUUC-Pab-098295	Pongo abelii	40.00	4.90e-01	26.90
IUUC-Pop-099628	Populus trichocarpa	61.81	3.00e-65	240.00
IUUC-Ppe-101322	Prunus persica	63.68	1.00e-68	251.00
IUUC-Sit-109772	Setaria italica	50.54	4.00e-44	171.00
IUUC-Sly-110939	Solanum lycopersicum	65.45	6.00e-64	236.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence