iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Oru-085183

Ensembl Protein ID

ORUFI01G36260.1

UniProt Accession

A0A0E0N3B0; A0A0E0N3B0_ORYRU

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ORUFI01G36260	ORUFI01G36260.1	ORUFI01G36260.1
ORUFI01G36260	ORUFI01G36260.2	ORUFI01G36260.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.90e-36	122.3	319	357
UBD/Beta-Prp	3.80e-68	231.0	187	362

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH + ++ ++f +d + +v+G+ D+ +kvWDl+ g+ll+
   Q: 319  GHRGAIRTIRFtPDgRWVVTGGEDNIVKVWDLTAGKLLH 357
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 87   vhtlkghedsvlslsfsp.sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltggh 179
           +  + +h+++v+sls+ + s+ ++++G++dr +++w + +++ l   lsgh+g+v +v+++  + l+ +Gs ++ ++lWdl+ +k++r ltg h
   Q: 187  LEEFVAHDAEVRSLSIGKkSSRVFITGGSDRKVNLWAIGKQTPLL-SLSGHTGSVESVEFDTAEVLVLAGSSNGSIKLWDLEEAKVVRSLTG-H 278
           556779************666************************.*********************************************9.* PP
   S: 180  tdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlh 263
            +s +s++f++ g++++sgs d+++k+wd++++ c++t++gh+  ++ +rf+p++ ++v+g++D+ +++Wdl+ g+ll+ ++ h
   Q: 279  RSSCTSVEFHPFGEFFASGSSDTDLKIWDIKKKGCIHTYKGHRGAIRTIRFTPDGRWVVTGGEDNIVKVWDLTAGKLLHDFKFH 362
           ******************************************************************************999765 PP

Organism

Oryza rufipogon

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MWGLSFISFS RNAREENLTL ASSGTKEKKR EQKRSKGRRR GRKGGDKNST LSLRHSTTPT 60
HLPTPLHTSR FHCLLRDRER ERERERKRKK EGDAAVISLA PAPFPSPAQN TKYSDPEPSP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTGGGGAC TTTCCTTTAT TTCATTCTCA AGGAACGCGA GAGAAGAGAA CCTTACTTTA 60
GCCAGCTCTG GTACAAAAGA AAAGAAACGA GAACAAAAGC GAAGCAAAGG GAGGCGAAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000869	Aegilops tauschii	69.92	0.00e+00	1166.00
IUUC-Bdi-014531	Brachypodium distachyon	76.67	0.00e+00	1284.00
IUUC-Cme-027305	Cyanidioschyzon merolae	31.60	7.00e-23	102.00
IUUC-Gma-043341	Glycine max	44.31	0.00e+00	648.00
IUUC-Hvu-047729	Hordeum vulgare	72.97	0.00e+00	940.00
IUUC-Mac-065245	Musa acuminata	55.86	0.00e+00	630.00
IUUC-Oba-075016	Oryza barthii	98.03	0.00e+00	1446.00
IUUC-Obr-076138	Oryza brachyantha	85.57	0.00e+00	1477.00
IUUC-Ogl-077401	Oryza glaberrima	93.53	0.00e+00	1587.00
IUUC-Ogu-078062	Oryza glumaepatula	99.64	0.00e+00	1707.00
IUUC-Oin-080042	Oryza indica	99.53	0.00e+00	1703.00
IUUC-Olo-080713	Oryza longistaminata	97.70	0.00e+00	1429.00
IUUC-Ome-081192	Oryza meridionalis	96.68	0.00e+00	1381.00
IUUC-Oni-082473	Oryza nivara	99.52	0.00e+00	1691.00
IUUC-Opu-083293	Oryza punctata	89.87	0.00e+00	1463.00
IUUC-Osa-085801	Oryza sativa	93.65	0.00e+00	1587.00
IUUC-Sit-110364	Setaria italica	76.55	0.00e+00	1207.00
IUUC-Sbi-114389	Sorghum bicolor	67.67	0.00e+00	1133.00
IUUC-Tae-125511	Triticum aestivum	73.30	0.00e+00	1228.00
IUUC-Tur-126181	Triticum urartu	74.09	0.00e+00	1227.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence