iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007332

UUCD1 version

UUC-ArT-00869

Ensembl Protein ID

AT5G64660.1

UniProt Accession

Q9FLF4; PUB27_ARATH

Genbank Protein ID

BAB11433.1; AED97933.1; AAY56410.1; ABF59047.1

Protein Name

U-box domain-containing protein 27; Plant U-box protein 27; RING-type E3 ubiquitin transferase PUB27

Genbank Nucleotide ID

AB010076; CP002688; BT023419; BT025629

Gene Name

PUB27; At5g64660; MUB3.18

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G64660	AT5G64660.1	AT5G64660.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.20e-28	99.9	10	80

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceen 72
           vp +f+CpIsl++M+ Pv l++G+tydr+sI++wl+ g++tcP t+q l+++d++Pn tl+rli+ w ++ 
   Q: 10   VPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQNKDFIPNRTLQRLIEIWSDSV 80
           89*****************************************************************9875 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase.

Protein Sequence
(Fasta)

MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN 60
KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA DAIDRVKIEK EERDDREVLS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAAAAAGTGA AATTTGACGT CACCAAAGTT TGACTCTTTT TCTCTTTCAT CTTTTAAACC 60
AAACCCCACG CACTAAAACC ATAGACAAAC TCTCTCTCTT CTCTCTCTCT CCCACACACA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51698--U_BOX

Pfam

PF04564--U-box

SMART

SM00504--Ubox

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0010200--P:response to chitin

KEGG

ath:AT5G64660

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002532	Amborella trichopoda	44.44	5.00e-92	330.00
IUUC-Aly-005744	Arabidopsis lyrata	94.05	0.00e+00	725.00
IUUC-Bol-015831	Brassica oleracea	87.14	0.00e+00	721.00
IUUC-Bra-017320	Brassica rapa	88.10	0.00e+00	699.00
IUUC-Gma-042668	Glycine max	53.13	2.00e-113	401.00
IUUC-Mtr-057795	Medicago truncatula	55.12	7.00e-120	422.00
IUUC-Mac-064700	Musa acuminata	33.86	5.00e-50	191.00
IUUC-Oba-075887	Oryza barthii	45.83	8.00e-29	119.00
IUUC-Ome-081099	Oryza meridionalis	38.95	2.00e-31	129.00
IUUC-Ppe-101668	Prunus persica	52.18	1.00e-119	422.00
IUUC-Sly-111549	Solanum lycopersicum	47.71	2.00e-99	355.00
IUUC-Stu-112738	Solanum tuberosum	48.17	2.00e-99	355.00
IUUC-Sre-115187	Sporisorium reilianum	46.51	3.00e-07	48.90
IUUC-Tca-121270	Theobroma cacao	54.27	5.00e-113	400.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence