iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Psi-093156

Ensembl Protein ID

ENSPSIP00000006477.1

UniProt Accession

K7FEL7; K7FEL7_PELSI

Genbank Protein ID

ENSPSIP00000006477

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AGCU01033550

Gene Name

RFWD3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPSIG00000005935.1	ENSPSIT00000006514.1	ENSPSIP00000006477.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.80e-07	31.3	479	517

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtgvllk 37
           H+  +++laf   +d+ll+s++ D+t+k+ +l+t+++++
   Q: 479  HSKQIRGLAFsnrTDGLLLSAALDHTLKLTSLTTNTVVQ 517
           9999*******9777**************9999998887 PP

Organism

Pelodiscus sinensis

Protein Sequence
(Fasta)

MLHVCFLHSM PLSAMAQEEM EVDLQPAVAY PVESQEAFPS DPSDRALLSH SPVPREGAEG 60
FVVPPADEEV IVISGADETA PVAGSDPQLH AAPSLDGLQR LHRVLELFQR QAAQEITRQP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTTACATG TTTGTTTTCT CCATTCCATG CCTCTCTCAG CAATGGCACA GGAAGAAATG 60
GAAGTGGATC TTCAGCCAGC AGTTGCTTAT CCTGTAGAGT CTCAGGAGGC GTTTCCTTCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0732--Signal

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING
SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0035861--C:site of double-strand break
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0031571--P:mitotic G1 DNA damage checkpoint
GO:2000001--P:regulation of DNA damage checkpoint
GO:0010212--P:response to ionizing radiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000929	Aegilops tauschii	25.42	3.00e-16	79.70
IUUC-Aml-001188	Ailuropoda melanoleuca	59.17	0.00e+00	780.00
IUUC-Atr-003034	Amborella trichopoda	28.10	9.00e-17	80.50
IUUC-Apl-003182	Anas platyrhynchos	84.05	0.00e+00	890.00
IUUC-Aca-004619	Anolis carolinensis	82.30	0.00e+00	912.00
IUUC-Aly-006391	Arabidopsis lyrata	25.31	9.00e-32	131.00
IUUC-Ath-007300	Arabidopsis thaliana	24.21	2.00e-33	137.00
IUUC-Ame-010890	Astyanax mexicanus	66.33	0.00e+00	690.00
IUUC-Bta-013051	Bos taurus	68.74	0.00e+00	759.00
IUUC-Bdi-014519	Brachypodium distachyon	27.38	5.00e-24	105.00
IUUC-Bol-015271	Brassica oleracea	27.96	2.00e-34	140.00
IUUC-Bra-017931	Brassica rapa	27.74	6.00e-34	138.00
IUUC-Cja-019240	Callithrix jacchus	59.97	0.00e+00	775.00
IUUC-Cfa-021010	Canis familiaris	62.41	0.00e+00	787.00
IUUC-Cpo-022308	Cavia porcellus	66.10	0.00e+00	719.00
IUUC-Csa-023501	Chlorocebus sabaeus	55.36	0.00e+00	783.00
IUUC-Cho-024900	Choloepus hoffmanni	56.65	0.00e+00	700.00
IUUC-Cin-025403	Ciona intestinalis	38.40	2.00e-95	343.00
IUUC-Csv-025819	Ciona savignyi	37.69	2.00e-44	172.00
IUUC-Cme-027123	Cyanidioschyzon merolae	23.74	6.00e-18	85.50
IUUC-Dre-028354	Danio rerio	63.54	0.00e+00	627.00
IUUC-Dno-029400	Dasypus novemcinctus	62.69	0.00e+00	786.00
IUUC-Dor-030320	Dipodomys ordii	55.59	0.00e+00	654.00
IUUC-Dme-031949	Drosophila melanogaster	26.13	4.00e-40	159.00
IUUC-Ete-032691	Echinops telfairi	50.20	3.00e-106	379.00
IUUC-Eca-034320	Equus caballus	61.20	0.00e+00	797.00
IUUC-Fca-035732	Felis catus	62.41	0.00e+00	791.00
IUUC-Fal-036648	Ficedula albicollis	71.01	0.00e+00	969.00
IUUC-Gmo-038609	Gadus morhua	62.77	5.00e-156	543.00
IUUC-Gga-040522	Gallus gallus	62.62	4.00e-152	530.00
IUUC-Gac-042318	Gasterosteus aculeatus	62.26	5.00e-151	526.00
IUUC-Gma-043184	Glycine max	27.21	3.00e-27	116.00
IUUC-Ggo-044464	Gorilla gorilla	59.97	0.00e+00	783.00
IUUC-Hsa-045991	Homo sapiens	60.90	0.00e+00	781.00
IUUC-Hvu-047705	Hordeum vulgare	24.67	3.00e-28	119.00
IUUC-Itr-047977	Ictidomys tridecemlineatus	58.97	0.00e+00	793.00
IUUC-Lch-050112	Latimeria chalumnae	72.07	0.00e+00	767.00
IUUC-Lpe-051605	Leersia perrieri	26.07	6.00e-17	82.00
IUUC-Loc-052241	Lepisosteus oculatus	71.54	0.00e+00	708.00
IUUC-Laf-054559	Loxodonta africana	68.30	0.00e+00	687.00
IUUC-Mcc-055093	Macaca mulatta	60.90	0.00e+00	781.00
IUUC-Meu-056417	Macropus eugenii	65.73	0.00e+00	677.00
IUUC-Mtr-058533	Medicago truncatula	26.79	2.00e-32	133.00
IUUC-Mga-059498	Meleagris gallopavo	68.73	0.00e+00	836.00
IUUC-Mmr-061782	Microcebus murinus	58.94	0.00e+00	769.00
IUUC-Mdo-062053	Monodelphis domestica	73.41	0.00e+00	786.00
IUUC-Mmu-063352	Mus musculus	52.38	0.00e+00	731.00
IUUC-Mac-064582	Musa acuminata	29.56	9.00e-28	118.00
IUUC-Mpu-066087	Mustela putorius furo	59.69	0.00e+00	781.00
IUUC-Mlu-068147	Myotis lucifugus	69.15	0.00e+00	728.00
IUUC-Nle-069503	Nomascus leucogenys	55.82	0.00e+00	724.00
IUUC-Opr-070479	Ochotona princeps	51.01	0.00e+00	709.00
IUUC-Ont-071700	Oreochromis niloticus	62.97	0.00e+00	656.00
IUUC-Oan-073702	Ornithorhynchus anatinus	80.44	0.00e+00	850.00
IUUC-Ocu-074886	Oryctolagus cuniculus	60.36	0.00e+00	765.00
IUUC-Oba-075729	Oryza barthii	27.74	5.00e-27	115.00
IUUC-Obr-076562	Oryza brachyantha	28.05	8.00e-19	88.20
IUUC-Ogl-077615	Oryza glaberrima	27.74	5.00e-27	115.00
IUUC-Ogu-078921	Oryza glumaepatula	28.06	2.00e-27	117.00
IUUC-Oin-079250	Oryza indica	25.00	9.00e-19	88.20
IUUC-Olo-080758	Oryza longistaminata	26.50	1.00e-25	110.00
IUUC-Ome-081707	Oryza meridionalis	25.67	1.00e-20	94.40
IUUC-Oni-083006	Oryza nivara	28.06	3.00e-27	116.00
IUUC-Opu-083650	Oryza punctata	26.97	8.00e-26	111.00
IUUC-Oru-084924	Oryza rufipogon	27.97	4.00e-28	119.00
IUUC-Osa-085820	Oryza sativa	28.06	3.00e-27	116.00
IUUC-Ola-087229	Oryzias latipes	64.76	1.00e-156	545.00
IUUC-Oga-088243	Otolemur garnettii	62.28	0.00e+00	763.00
IUUC-Oar-089461	Ovis aries	58.84	0.00e+00	771.00
IUUC-Ptr-090527	Pan troglodytes	59.68	0.00e+00	775.00
IUUC-Pan-092431	Papio anubis	54.02	0.00e+00	707.00
IUUC-Pno-094897	Phaeosphaeria nodorum	27.64	5.00e-08	51.60
IUUC-Ppa-095305	Physcomitrella patens	39.37	6.00e-22	99.80
IUUC-Pfo-097065	Poecilia formosa	63.29	1.00e-180	626.00
IUUC-Pab-098272	Pongo abelii	56.36	0.00e+00	785.00
IUUC-Pop-099827	Populus trichocarpa	27.29	3.00e-31	129.00
IUUC-Pca-100713	Procavia capensis	50.85	0.00e+00	672.00
IUUC-Ppe-102103	Prunus persica	24.39	1.00e-33	137.00
IUUC-Pva-103133	Pteropus vampyrus	68.92	6.00e-176	610.00
IUUC-Pte-104191	Pyrenophora teres	38.20	1.00e-07	50.10
IUUC-Pyt-104734	Pyrenophora triticirepentis	51.02	1.00e-07	50.10
IUUC-Sha-107628	Sarcophilus harrisii	59.32	0.00e+00	801.00
IUUC-Sit-109781	Setaria italica	29.29	3.00e-27	116.00
IUUC-Sly-111779	Solanum lycopersicum	29.62	3.00e-33	136.00
IUUC-Stu-112817	Solanum tuberosum	43.55	4.00e-21	94.70
IUUC-Sar-113124	Sorex araneus	54.18	1.00e-142	499.00
IUUC-Sbi-114107	Sorghum bicolor	26.29	2.00e-27	116.00
IUUC-Ssc-115850	Sus scrofa	71.83	0.00e+00	760.00
IUUC-Tgu-117295	Taeniopygia guttata	84.22	0.00e+00	891.00
IUUC-Tru-117539	Takifugu rubripes	64.41	0.00e+00	649.00
IUUC-Tsy-118805	Tarsius syrichta	56.95	9.00e-91	327.00
IUUC-Tni-120274	Tetraodon nigroviridis	63.84	0.00e+00	645.00
IUUC-Tca-121162	Theobroma cacao	28.57	6.00e-29	122.00
IUUC-Tae-124822	Triticum aestivum	26.49	1.00e-28	121.00
IUUC-Tur-126162	Triticum urartu	26.71	3.00e-20	93.60
IUUC-Tbe-127884	Tupaia belangeri	77.78	8.00e-57	214.00
IUUC-Ttr-128665	Tursiops truncatus	69.44	2.00e-109	390.00
IUUC-Vpa-130385	Vicugna pacos	60.49	0.00e+00	802.00
IUUC-Vvi-131464	Vitis vinifera	27.36	9.00e-29	121.00
IUUC-Xtr-132015	Xenopus tropicalis	75.83	0.00e+00	790.00
IUUC-Xma-133109	Xiphophorus maculatus	57.65	0.00e+00	627.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence