iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Kpa-049369

Ensembl Protein ID

CAY69485

UniProt Accession

C4R1W1; C4R1W1_KOMPG

Genbank Protein ID

CAY69485.1

Protein Name

Splicing factor, component of the U4/U6-U5 snRNP complex

Genbank Nucleotide ID

FN392320

Gene Name

PAS_chr2-2_0424

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PAS_chr2-2_0424	CAY69485	CAY69485

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-30	102.2	307	342
UBD/Beta-Prp	1.30e-56	190.0	133	378

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgv 34
           gH +s+++ ++  ++  l+++s Dg+ik+WD+r ++
   Q: 307  GHMGSIYGSSWryNGYELATASSDGSIKIWDMRMQK 342
           8**********977688**************98765 PP

UBD/Beta-Prp

   S: 12   vitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdls..........tgkcvhtlkghedsvlslsf 102
            i+ v +spd++ +a+gs+dg + + + ++ +l r l+g+++++  +++  d+ i++t+ +D+ti+++ ++          +++  ++l+gh+d+v  lsf
   Q: 133  CISIVRVSPDDQAVAAGSWDGNTYILNSQDLSLRRVLYGNNSKIGGIDWYYDSRIIATSQSDGTINLFQYNtdtdtkntetNNSRDSKLQGHNDRVARLSF 233
           4666778**************************9999*******************************7776677888888778889999*********** PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgt 203
           +p g +l+s+s d+t r wd+et+q l  +++gh++ v +v+ +p+g+l+ s++lD++v++Wdl+ gk++  l+g h +s+y  s+++ng el+++s dg+
   Q: 234  HPMGRYLASASFDSTWRYWDVETQQQLL-LQEGHTKPVFTVEHQPNGSLISSAGLDGIVKIWDLRLGKCISNLEG-HMGSIYGSSWRYNGYELATASSDGS 332
           ****************************.*********************************************9.************************* PP
   S: 204  vklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdl 251
           +k+wd++ ++  ++  +h++ +++vr++  d+ ++s s D++i+i+ +
   Q: 333  IKIWDMRMQKEKVSIPAHSKLISDVRLL--DNVMISSSYDNTINIFSS 378
           *******99889****************..***************854 PP

Organism

Komagataella pastoris

Protein Sequence
(Fasta)

MQTFTKNRSA SRSPRELNEQ IMSHSEYDEN KQRVSEATSA DRFYEPKLSS YPNVSIEESD 60
ENEEFYTPGS ENLYHCRMRI AKWSLKQTSR MHKGFRLFVK NNSLNEILME KRRVNALYST 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCAAACGT TCACCAAGAA TCGGAGTGCT TCCAGAAGTC CAAGGGAATT AAATGAACAA 60
ATTATGAGCC ACAGCGAATA TGATGAGAAT AAGCAAAGGG TATCAGAAGC AACATCTGCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0046540--C:U4/U6 x U5 tri-snRNP complex

KEGG

ppa:PAS_chr2-2_0424

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	33.61	1.00e-52	198.00
IUUC-Aml-001737	Ailuropoda melanoleuca	33.33	1.00e-63	234.00
IUUC-Atr-002828	Amborella trichopoda	35.22	3.00e-57	213.00
IUUC-Apl-003723	Anas platyrhynchos	33.42	1.00e-62	231.00
IUUC-Aca-004972	Anolis carolinensis	33.42	7.00e-63	232.00
IUUC-Aly-006531	Arabidopsis lyrata	31.38	6.00e-46	176.00
IUUC-Ath-007367	Arabidopsis thaliana	31.20	7.00e-53	199.00
IUUC-Ago-007893	Ashbya gossypii	35.12	1.00e-64	238.00
IUUC-Acl-008236	Aspergillus clavatus	34.41	2.00e-62	230.00
IUUC-Afl-008522	Aspergillus flavus	34.86	1.00e-68	251.00
IUUC-Afu-008904	Aspergillus fumigatus	34.64	1.00e-64	238.00
IUUC-Ani-009198	Aspergillus nidulans	34.02	4.00e-67	246.00
IUUC-Ang-009662	Aspergillus niger	37.33	1.00e-71	261.00
IUUC-Aor-009881	Aspergillus oryzae	34.86	6.00e-69	252.00
IUUC-Ate-010333	Aspergillus terreus	33.08	4.00e-59	220.00
IUUC-Ame-011697	Astyanax mexicanus	33.16	6.00e-65	239.00
IUUC-Bgr-012254	Blumeria graminis	37.13	2.00e-73	267.00
IUUC-Bta-012615	Bos taurus	33.24	3.00e-64	236.00
IUUC-Bci-013720	Botrytis cinerea	36.77	3.00e-73	267.00
IUUC-Bdi-014302	Brachypodium distachyon	36.03	8.00e-58	215.00
IUUC-Bol-015594	Brassica oleracea	31.30	2.00e-48	184.00
IUUC-Bra-017465	Brassica rapa	31.30	7.00e-49	186.00
IUUC-Cel-018632	Caenorhabditis elegans	30.00	8.00e-56	209.00
IUUC-Cja-019747	Callithrix jacchus	33.33	1.00e-63	235.00
IUUC-Cfa-020288	Canis familiaris	33.33	1.00e-63	235.00
IUUC-Cpo-021440	Cavia porcellus	32.98	7.00e-63	232.00
IUUC-Cre-022716	Chlamydomonas reinhardtii	35.00	9.00e-54	201.00
IUUC-Csa-023139	Chlorocebus sabaeus	33.91	7.00e-62	228.00
IUUC-Cho-024481	Choloepus hoffmanni	32.45	5.00e-60	223.00
IUUC-Cin-025106	Ciona intestinalis	36.78	6.00e-62	229.00
IUUC-Csv-026087	Ciona savignyi	36.78	1.00e-61	228.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	34.62	3.00e-67	248.00
IUUC-Cne-026793	Cryptococcus neoformans	30.52	9.00e-58	215.00
IUUC-Dre-028723	Danio rerio	33.24	2.00e-63	234.00
IUUC-Dno-029299	Dasypus novemcinctus	33.33	1.00e-63	235.00
IUUC-Dse-031562	Dothistroma septosporum	35.59	6.00e-70	256.00
IUUC-Dme-031783	Drosophila melanogaster	37.69	1.00e-56	211.00
IUUC-Ete-032669	Echinops telfairi	32.71	1.00e-63	234.00
IUUC-Eca-033566	Equus caballus	33.33	2.00e-63	234.00
IUUC-Eeu-034524	Erinaceus europaeus	36.03	2.00e-47	181.00
IUUC-Fca-036215	Felis catus	33.33	1.00e-63	235.00
IUUC-Fal-037018	Ficedula albicollis	32.14	2.00e-48	184.00
IUUC-Fox-037936	Fusarium oxysporum	33.76	2.00e-66	244.00
IUUC-Fso-038366	Fusarium solani	34.01	1.00e-66	244.00
IUUC-Gmo-038966	Gadus morhua	36.96	5.00e-55	206.00
IUUC-Ggr-039942	Gaeumannomyces graminis	34.79	2.00e-67	247.00
IUUC-Gga-040797	Gallus gallus	33.06	5.00e-62	229.00
IUUC-Gac-042598	Gasterosteus aculeatus	35.50	3.00e-63	233.00
IUUC-Gma-044097	Glycine max	33.43	4.00e-53	200.00
IUUC-Ggo-044682	Gorilla gorilla	33.33	2.00e-63	234.00
IUUC-Hsa-045804	Homo sapiens	33.33	1.00e-63	235.00
IUUC-Hvu-047567	Hordeum vulgare	32.79	9.00e-54	202.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	33.78	2.00e-64	238.00
IUUC-Lch-050074	Latimeria chalumnae	38.89	9.00e-61	225.00
IUUC-Lpe-051333	Leersia perrieri	35.01	3.00e-54	203.00
IUUC-Loc-052164	Lepisosteus oculatus	33.96	6.00e-64	236.00
IUUC-Lma-053088	Leptosphaeria maculans	36.78	1.00e-67	248.00
IUUC-Laf-053460	Loxodonta africana	33.33	9.00e-64	235.00
IUUC-Mcc-055859	Macaca mulatta	33.33	1.00e-63	235.00
IUUC-Meu-056134	Macropus eugenii	34.32	2.00e-64	237.00
IUUC-Mor-057251	Magnaporthe oryzae	34.01	8.00e-66	242.00
IUUC-Mpo-057375	Magnaporthe poae	39.23	4.00e-53	199.00
IUUC-Mtr-058546	Medicago truncatula	34.26	3.00e-50	190.00
IUUC-Mla-059145	Melampsora laricipopulina	36.42	3.00e-59	220.00
IUUC-Mga-059855	Meleagris gallopavo	33.33	4.00e-62	229.00
IUUC-Mvi-060372	Microbotryum violaceum	30.10	7.00e-53	199.00
IUUC-Mmr-060826	Microcebus murinus	33.24	1.00e-63	234.00
IUUC-Mdo-062748	Monodelphis domestica	34.04	3.00e-64	237.00
IUUC-Mmu-063351	Mus musculus	33.24	1.00e-63	234.00
IUUC-Mac-064846	Musa acuminata	34.88	5.00e-53	199.00
IUUC-Mpu-066006	Mustela putorius furo	33.33	1.00e-63	235.00
IUUC-Mlu-067398	Myotis lucifugus	33.33	2.00e-63	234.00
IUUC-Nfi-068399	Neosartorya fischeri	34.59	7.00e-68	249.00
IUUC-Ncr-068711	Neurospora crassa	35.28	3.00e-69	253.00
IUUC-Nle-069982	Nomascus leucogenys	33.33	1.00e-63	235.00
IUUC-Opr-070596	Ochotona princeps	33.24	1.00e-63	234.00
IUUC-Ont-072374	Oreochromis niloticus	34.23	1.00e-64	238.00
IUUC-Oan-073166	Ornithorhynchus anatinus	32.53	7.00e-61	225.00
IUUC-Ocu-074371	Oryctolagus cuniculus	33.33	2.00e-63	234.00
IUUC-Oba-075083	Oryza barthii	34.17	4.00e-54	203.00
IUUC-Obr-076405	Oryza brachyantha	34.73	3.00e-55	206.00
IUUC-Ogl-077683	Oryza glaberrima	34.17	5.00e-54	203.00
IUUC-Ogu-078486	Oryza glumaepatula	34.45	2.00e-54	204.00
IUUC-Oin-079679	Oryza indica	34.92	2.00e-55	208.00
IUUC-Olo-080243	Oryza longistaminata	34.73	8.00e-55	205.00
IUUC-Ome-081230	Oryza meridionalis	34.92	1.00e-55	208.00
IUUC-Oni-082961	Oryza nivara	34.92	1.00e-55	208.00
IUUC-Opu-083189	Oryza punctata	34.73	7.00e-55	206.00
IUUC-Oru-084353	Oryza rufipogon	34.92	1.00e-55	207.00
IUUC-Osa-085458	Oryza sativa	34.92	1.00e-55	208.00
IUUC-Ola-086940	Oryzias latipes	34.50	5.00e-66	243.00
IUUC-Olu-087580	Ostreococcus lucimarinus	33.51	9.00e-47	179.00
IUUC-Oga-088703	Otolemur garnettii	31.73	2.00e-56	211.00
IUUC-Oar-089829	Ovis aries	33.51	3.00e-64	237.00
IUUC-Ptr-090838	Pan troglodytes	33.33	1.00e-63	235.00
IUUC-Pan-092261	Papio anubis	33.24	1.00e-63	235.00
IUUC-Psi-093020	Pelodiscus sinensis	32.80	4.00e-62	230.00
IUUC-Pno-094858	Phaeosphaeria nodorum	36.06	7.00e-67	245.00
IUUC-Ppa-095531	Physcomitrella patens	33.87	3.00e-57	213.00
IUUC-Pfo-096812	Poecilia formosa	30.69	1.00e-50	192.00
IUUC-Pab-097805	Pongo abelii	34.06	2.00e-59	221.00
IUUC-Pop-100051	Populus trichocarpa	35.10	5.00e-55	206.00
IUUC-Pca-100152	Procavia capensis	33.60	1.00e-63	235.00
IUUC-Ppe-101244	Prunus persica	36.01	1.00e-59	221.00
IUUC-Pva-102529	Pteropus vampyrus	31.65	1.00e-57	214.00
IUUC-Pgr-103550	Puccinia graminis	32.39	7.00e-58	216.00
IUUC-Ptt-103951	Puccinia triticina	37.25	3.00e-49	187.00
IUUC-Pte-104151	Pyrenophora teres	34.65	2.00e-63	234.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	35.17	9.00e-63	232.00
IUUC-Rno-105747	Rattus norvegicus	33.51	6.00e-64	236.00
IUUC-Sce-106418	Saccharomyces cerevisiae	38.74	1.00e-69	254.00
IUUC-Sha-107334	Sarcophilus harrisii	34.13	3.00e-64	237.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	31.58	1.00e-51	194.00
IUUC-Spo-108189	Schizosaccharomyces pombe	38.21	1.00e-64	238.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	36.51	2.00e-72	263.00
IUUC-Smo-108924	Selaginella moellendorffii	32.68	6.00e-56	209.00
IUUC-Sit-110102	Setaria italica	33.33	2.00e-54	204.00
IUUC-Sly-111668	Solanum lycopersicum	36.11	3.00e-60	223.00
IUUC-Stu-111928	Solanum tuberosum	36.11	2.00e-60	224.00
IUUC-Sar-113266	Sorex araneus	36.01	2.00e-60	224.00
IUUC-Sbi-114134	Sorghum bicolor	33.61	2.00e-54	204.00
IUUC-Sre-115114	Sporisorium reilianum	34.92	7.00e-63	232.00
IUUC-Ssc-115443	Sus scrofa	33.33	1.00e-63	234.00
IUUC-Tgu-117157	Taeniopygia guttata	33.42	9.00e-63	232.00
IUUC-Tru-118587	Takifugu rubripes	34.57	2.00e-65	241.00
IUUC-Tsy-119157	Tarsius syrichta	33.33	3.00e-63	234.00
IUUC-Tni-120427	Tetraodon nigroviridis	34.83	4.00e-65	239.00
IUUC-Tca-121368	Theobroma cacao	33.42	1.00e-54	205.00
IUUC-Tre-122074	Trichoderma reesei	34.01	2.00e-65	241.00
IUUC-Tvi-122349	Trichoderma virens	34.52	7.00e-66	242.00
IUUC-Tae-123589	Triticum aestivum	33.61	2.00e-52	197.00
IUUC-Tur-125983	Triticum urartu	35.88	2.00e-51	193.00
IUUC-Tme-126951	Tuber melanosporum	35.97	8.00e-72	262.00
IUUC-Tbe-128136	Tupaia belangeri	36.67	5.00e-56	209.00
IUUC-Uma-129399	Ustilago maydis	34.56	2.00e-61	227.00
IUUC-Vda-129842	Verticillium dahliae	35.38	4.00e-69	253.00
IUUC-Vpa-130440	Vicugna pacos	33.33	1.00e-63	235.00
IUUC-Vvi-131075	Vitis vinifera	36.19	1.00e-60	225.00
IUUC-Xma-133002	Xiphophorus maculatus	36.66	2.00e-62	230.00
IUUC-Yli-134569	Yarrowia lipolytica	34.72	2.00e-58	218.00
IUUC-Zma-135799	Zea mays	37.50	5.00e-52	196.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence