iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0007s07120	POPTR_0007s07120.1	POPTR_0007s07120.1
POPTR_0007s07120	POPTR_0007s07120.2	POPTR_0007s07120.2

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	83.89	0.00e+00	1793.00	IUUC-Ath-007200

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MNTGGRLIAG SHNRNEFVLI NADENARIKS VQELSGQVCH ICGDEIEITV DGEPFVACNE 60
CAFPVCRPCY EYERREGNQA CPQCKTRYKR LKGSPRVEGD EEEDDIDDLE HEFDYGNFDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAACACCG GGGGTCGACT CATTGCTGGT TCTCACAACA GGAACGAGTT TGTCCTCATA 60
AATGCCGATG AAAATGCAAG AGTAAGTAAC CCATTTGCTC GTTTTGCTGA TTTCTGATCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-1003--Cell membrane
KW-0961--Cell wall biogenesis/degradation
KW-0135--Cellulose biosynthesis
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0328--Glycosyltransferase
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR005150--Cellulose_synth
IPR027934--CES_Znf_RING
IPR029044--Nucleotide-diphossugar_trans
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF03552--Cellulose_synt
PF14569--zf-UDP

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0005886--C:plasma membrane
GO:0016760--F:cellulose synthase (UDP-forming) activity
GO:0008270--F:zinc ion binding
GO:0071555--P:cell wall organization
GO:0030244--P:cellulose biosynthetic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002872	Amborella trichopoda	79.65	0.00e+00	1692.00
IUUC-Aly-005433	Arabidopsis lyrata	83.38	0.00e+00	1781.00
IUUC-Ath-007200	Arabidopsis thaliana	84.17	0.00e+00	1818.00
IUUC-Bdi-014640	Brachypodium distachyon	72.23	0.00e+00	1577.00
IUUC-Bol-015078	Brassica oleracea	83.89	0.00e+00	1804.00
IUUC-Bra-016987	Brassica rapa	83.44	0.00e+00	1790.00
IUUC-Cre-022912	Chlamydomonas reinhardtii	34.91	1.00e-09	55.10
IUUC-Gma-044160	Glycine max	87.70	0.00e+00	1907.00
IUUC-Lpe-051438	Leersia perrieri	70.94	0.00e+00	1543.00
IUUC-Mtr-058076	Medicago truncatula	85.99	0.00e+00	1843.00
IUUC-Mac-064824	Musa acuminata	73.85	0.00e+00	1555.00
IUUC-Oba-075067	Oryza barthii	72.27	0.00e+00	1552.00
IUUC-Obr-076190	Oryza brachyantha	71.20	0.00e+00	1546.00
IUUC-Ogl-077612	Oryza glaberrima	72.27	0.00e+00	1552.00
IUUC-Ogu-078695	Oryza glumaepatula	72.36	0.00e+00	1553.00
IUUC-Oin-079596	Oryza indica	72.27	0.00e+00	1553.00
IUUC-Olo-080926	Oryza longistaminata	69.76	0.00e+00	1530.00
IUUC-Ome-081460	Oryza meridionalis	72.45	0.00e+00	1555.00
IUUC-Oni-082402	Oryza nivara	72.36	0.00e+00	1553.00
IUUC-Opu-083289	Oryza punctata	72.45	0.00e+00	1556.00
IUUC-Oru-084288	Oryza rufipogon	72.36	0.00e+00	1553.00
IUUC-Osa-085968	Oryza sativa	72.27	0.00e+00	1553.00
IUUC-Ppa-096023	Physcomitrella patens	69.72	0.00e+00	1359.00
IUUC-Ppe-101630	Prunus persica	88.52	0.00e+00	1896.00
IUUC-Sit-110573	Setaria italica	71.75	0.00e+00	1542.00
IUUC-Sly-111088	Solanum lycopersicum	80.07	0.00e+00	1710.00
IUUC-Stu-112367	Solanum tuberosum	80.71	0.00e+00	1722.00
IUUC-Sbi-114064	Sorghum bicolor	71.75	0.00e+00	1543.00
IUUC-Vvi-131287	Vitis vinifera	85.09	0.00e+00	1758.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence