iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006994

UUCD1 version

UUC-ArT-01478

Ensembl Protein ID

AT3G54850.1

UniProt Accession

Q8VZ40; Q9SV34; PUB14_ARATH

Genbank Protein ID

CAB41099.1; AEE79300.1; AAL38755.1; AAM20180.1

Protein Name

U-box domain-containing protein 14; E3 ubiquitin-protein ligase PUB14; Plant U-box protein 14; Prototypical U-box domain protein 14; RING-type E3 ubiquitin transferase PUB14

Genbank Nucleotide ID

AL049655; CP002686; AY065279; AY096530

Gene Name

PUB14; At3g54850; F28P10.170

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT3G54850	AT3G54850.1	AT3G54850.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein 3D Structure
PDB	MMDB
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/U-box	U-box	15231834; 19805280; 18552232

Classification

Family	E-value	Score	Start	End
E3 activity/RING/U-box	2.00e-32	112.0	248	320

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +pe+f+CpIslelM+dPv++++G+ty+rssI+kwl+ g+ktcP+ +++l +  l+Pn++l++li  wce+n++
   Q: 248  IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 320
           8*********************************************************************987 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Protein Sequence
(Fasta)

MGLTNCCSHE ELMSRLVDSV KEISGFSSSR GFIGKIQGDL VRRITLLSPF FEELIDVNVE 60
LKKDQITGFE AMRIALDSSL ELFRSVNGGS KLFQLFDRDS LVEKFRDMTV EIEAALSQIP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GACAAAATGA GACTTTTCAT GTCCAAATAG GTGTTTATTG TCACGTTGAT GAGAAGACTA 60
TTTCGTTCCA TAGCATTTCT GTTCCTCCTC TTGGTTTTTT GGGTTTCTTC TTCCTCGTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR003613--Ubox_domain
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX

Pfam

PF00514--Arm
PF04564--U-box

SMART

SM00185--ARM
SM00504--Ubox

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0070696--F:transmembrane receptor protein serine/threonine kinase binding
GO:0004842--F:ubiquitin-protein transferase activity

KEGG

ath:AT3G54850

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002932	Amborella trichopoda	61.24	0.00e+00	704.00
IUUC-Aly-006103	Arabidopsis lyrata	96.52	0.00e+00	1175.00
IUUC-Bdi-014691	Brachypodium distachyon	61.44	0.00e+00	640.00
IUUC-Bol-016160	Brassica oleracea	86.46	0.00e+00	1068.00
IUUC-Bra-016727	Brassica rapa	86.77	0.00e+00	1071.00
IUUC-Gma-043496	Glycine max	66.77	0.00e+00	811.00
IUUC-Hvu-047272	Hordeum vulgare	61.93	0.00e+00	630.00
IUUC-Lpe-051517	Leersia perrieri	62.06	4.00e-179	620.00
IUUC-Mtr-057651	Medicago truncatula	66.29	0.00e+00	783.00
IUUC-Mac-065604	Musa acuminata	55.48	1.00e-173	602.00
IUUC-Oba-075750	Oryza barthii	61.05	0.00e+00	633.00
IUUC-Obr-076793	Oryza brachyantha	61.90	2.00e-176	611.00
IUUC-Ogl-077380	Oryza glaberrima	61.24	0.00e+00	634.00
IUUC-Ogu-078219	Oryza glumaepatula	60.67	0.00e+00	629.00
IUUC-Oin-079724	Oryza indica	57.07	0.00e+00	643.00
IUUC-Ome-081932	Oryza meridionalis	61.05	0.00e+00	631.00
IUUC-Oni-082439	Oryza nivara	61.42	0.00e+00	635.00
IUUC-Opu-083837	Oryza punctata	56.74	0.00e+00	640.00
IUUC-Oru-085172	Oryza rufipogon	61.24	0.00e+00	633.00
IUUC-Osa-085991	Oryza sativa	61.24	0.00e+00	633.00
IUUC-Pop-099229	Populus trichocarpa	68.67	0.00e+00	822.00
IUUC-Ppe-101965	Prunus persica	63.78	0.00e+00	769.00
IUUC-Sit-110461	Setaria italica	63.01	7.00e-174	603.00
IUUC-Sly-111662	Solanum lycopersicum	66.02	0.00e+00	782.00
IUUC-Stu-111979	Solanum tuberosum	65.70	0.00e+00	775.00
IUUC-Sbi-114550	Sorghum bicolor	57.02	0.00e+00	629.00
IUUC-Tca-121269	Theobroma cacao	68.66	0.00e+00	815.00
IUUC-Tae-124061	Triticum aestivum	61.54	0.00e+00	638.00
IUUC-Tur-126276	Triticum urartu	59.13	5.00e-171	593.00
IUUC-Vvi-131729	Vitis vinifera	67.97	0.00e+00	796.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence